Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
AMBRA1Q9C0C7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
AMBRA1Q9C0C7 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 DGCR9-201ENST00000609630 2415 ntBASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 AC105206.1-202ENST00000314927 2368 ntBASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 AL138828.2-201ENST00000615812 383 ntBASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 LILRP1-201ENST00000444199 1370 ntBASIC14.16□□□□□ -0.14
AMBRA1Q9C0C7 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms