Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HIST1H1AQ02539 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 KRT18P13-201ENST00000400056 1290 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AL080243.2-201ENST00000418783 582 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CNN2P2-201ENST00000443536 909 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 USP40-206ENST00000443711 628 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AP006288.1-201ENST00000446065 395 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CNN2P3-201ENST00000450201 906 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 PPP6R2P1-201ENST00000450880 1275 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 VPS29-207ENST00000549970 818 ntTSL 3 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 METTL23-205ENST00000588302 925 ntTSL 5 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AL136317.3-201ENST00000618497 906 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AL033527.5-202ENST00000641632 1098 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AC079781.4-201ENST00000641908 219 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 AC027601.5-201ENST00000624065 2482 ntBASIC11.65□□□□□ -0.54
HIST1H1AQ02539 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HIST1H1AQ02539 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
HIST1H1AQ02539 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HIST1H1AQ02539 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC11.65□□□□□ -0.55
HIST1H1AQ02539 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HIST1H1AQ02539 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.55
HIST1H1AQ02539 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HIST1H1AQ02539 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
HIST1H1AQ02539 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HIST1H1AQ02539 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms