RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MYT1Q01538 1121 aa22.54■■□□□ 1.2
USP40-208ENST00000450966 PELP1Q8IZL8 1130 aaKnown RBP22.46■■□□□ 1.19
USP40-208ENST00000450966 DCAF8L2P0C7V8 631 aa22.36■■□□□ 1.17
USP40-208ENST00000450966 NISCHQ9Y2I1 1504 aa22.16■■□□□ 1.14
USP40-208ENST00000450966 CENPBP07199 599 aaPredicted RBP20.94■□□□□ 0.94
USP40-208ENST00000450966 ERICH6Q7L0X2 663 aa20.85■□□□□ 0.93
USP40-208ENST00000450966 TTBK1Q5TCY1 1321 aaPredicted RBP20.77■□□□□ 0.92
USP40-208ENST00000450966 CCER1Q8TC90 406 aaPredicted RBP20.72■□□□□ 0.91
USP40-208ENST00000450966 SUPT5HO00267 1087 aaKnown RBP20.69■□□□□ 0.9
USP40-208ENST00000450966 FAM9AQ8IZU1 332 aaPredicted RBP20.59■□□□□ 0.89
USP40-208ENST00000450966 ZEB1P37275 1124 aaPredicted RBP20.56■□□□□ 0.88
USP40-208ENST00000450966 SHROOM4Q9ULL8 1493 aa20.38■□□□□ 0.85
USP40-208ENST00000450966 PCGF6Q9BYE7 350 aa20.35■□□□□ 0.85
USP40-208ENST00000450966 HRCP23327 699 aa20.15■□□□□ 0.82
USP40-208ENST00000450966 APLP2Q06481 763 aa20.1■□□□□ 0.81
USP40-208ENST00000450966 EHMT2Q96KQ7 1210 aa20.08■□□□□ 0.81
USP40-208ENST00000450966 YTHDC1Q96MU7 727 aaKnown RBP20.06■□□□□ 0.8
USP40-208ENST00000450966 NEFLP07196 543 aa19.98■□□□□ 0.79
USP40-208ENST00000450966 RTL5Q5HYW3 569 aaPredicted RBP19.59■□□□□ 0.73
USP40-208ENST00000450966 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
USP40-208ENST00000450966 GTF3C3Q9Y5Q9 886 aa19.43■□□□□ 0.7
USP40-208ENST00000450966 TRIM26Q12899 539 aaPredicted RBP19.42■□□□□ 0.7
USP40-208ENST00000450966 DAXXQ9UER7 740 aaPredicted RBP19.39■□□□□ 0.69
USP40-208ENST00000450966 GLIPR1L2Q4G1C9 344 aa19.38■□□□□ 0.69
USP40-208ENST00000450966 PPARGC1BQ86YN6 1023 aaKnown RBP19.35■□□□□ 0.69
USP40-208ENST00000450966 RANGAP1P46060 587 aaPredicted RBP19.33■□□□□ 0.68
USP40-208ENST00000450966 ATP1B4Q9UN42 357 aaPredicted RBP19.33■□□□□ 0.68
USP40-208ENST00000450966 ABCC9O60706 1549 aa19.31■□□□□ 0.68
USP40-208ENST00000450966 MYT1LQ9UL68 1186 aa19.28■□□□□ 0.68
USP40-208ENST00000450966 ACIN1Q9UKV3 1341 aaKnown RBP19.24■□□□□ 0.67
USP40-208ENST00000450966 UBTFP17480 764 aaKnown RBP19.22■□□□□ 0.67
USP40-208ENST00000450966 DIEXFQ68CQ4 756 aaKnown RBP19.15■□□□□ 0.66
USP40-208ENST00000450966 EIF5BO60841 1220 aaKnown RBP19.11■□□□□ 0.65
USP40-208ENST00000450966 CLSPNQ9HAW4 1339 aa18.99■□□□□ 0.63
USP40-208ENST00000450966 ZNF316A6NFI3 1004 aaPredicted RBP18.97■□□□□ 0.63
USP40-208ENST00000450966 BCL11AQ9H165 835 aa18.94■□□□□ 0.62
USP40-208ENST00000450966 CDK11AQ9UQ88 783 aaPredicted RBP18.92■□□□□ 0.62
USP40-208ENST00000450966 PABPN1Q86U42 306 aaKnown RBP eCLIP18.91■□□□□ 0.62
USP40-208ENST00000450966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.88■□□□□ 0.61
USP40-208ENST00000450966 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
USP40-208ENST00000450966 SCAF1Q9H7N4 1312 aaKnown RBP18.87■□□□□ 0.61
USP40-208ENST00000450966 ANP32EQ9BTT0 268 aa18.82■□□□□ 0.6
USP40-208ENST00000450966 BCANQ96GW7 911 aa18.72■□□□□ 0.59
USP40-208ENST00000450966 CCDC180Q9P1Z9 1646 aa18.7■□□□□ 0.58
USP40-208ENST00000450966 ANP32AP39687 249 aaKnown RBP18.65■□□□□ 0.58
USP40-208ENST00000450966 NEUROD1Q13562 356 aa18.56■□□□□ 0.56
USP40-208ENST00000450966 POLR3GLQ9BT43 218 aa18.5■□□□□ 0.55
USP40-208ENST00000450966 ITGAEP38570 1179 aa18.49■□□□□ 0.55
USP40-208ENST00000450966 RB1CC1Q8TDY2 1594 aa18.48■□□□□ 0.55
USP40-208ENST00000450966 FBLN2P98095 1184 aa18.4■□□□□ 0.54
USP40-208ENST00000450966 SCRIBQ14160 1630 aa18.38■□□□□ 0.53
USP40-208ENST00000450966 NBR1Q14596 966 aa18.33■□□□□ 0.52
USP40-208ENST00000450966 ANP32BQ92688 251 aaKnown RBP18.31■□□□□ 0.52
USP40-208ENST00000450966 TNNT2P45379 298 aaPredicted RBP18.31■□□□□ 0.52
USP40-208ENST00000450966 CHIC1Q5VXU3 224 aa18.31■□□□□ 0.52
USP40-208ENST00000450966 ZCCHC6Q5VYS8 1495 aaKnown RBP18.3■□□□□ 0.52
USP40-208ENST00000450966 SLC4A1APQ9BWU0 796 aaKnown RBP18.29■□□□□ 0.52
USP40-208ENST00000450966 FKBP8Q14318 412 aa18.28■□□□□ 0.52
USP40-208ENST00000450966 ZBTB47Q9UFB7 747 aaPredicted RBP18.27■□□□□ 0.52
USP40-208ENST00000450966 NACADO15069 1562 aa18.27■□□□□ 0.51
USP40-208ENST00000450966 LOC105371045A0A1W2PR82 267 aa18.25■□□□□ 0.51
USP40-208ENST00000450966 NPM1P06748 294 aaKnown RBP eCLIP18.25■□□□□ 0.51
USP40-208ENST00000450966 ANP32CO43423 234 aa18.21■□□□□ 0.51
USP40-208ENST00000450966 ERICH6BQ5W0A0 696 aa18.2■□□□□ 0.5
USP40-208ENST00000450966 CNGB1Q14028 1251 aaPredicted RBP18.2■□□□□ 0.5
USP40-208ENST00000450966 NPM2Q86SE8 214 aaKnown RBP18.14■□□□□ 0.49
USP40-208ENST00000450966 NCLP19338 710 aaKnown RBP18.12■□□□□ 0.49
USP40-208ENST00000450966 SLC24A1O60721 1099 aa18.12■□□□□ 0.49
USP40-208ENST00000450966 ESF1Q9H501 851 aaKnown RBP18.1■□□□□ 0.49
USP40-208ENST00000450966 PRKCSHP14314 528 aaPredicted RBP18.1■□□□□ 0.49
USP40-208ENST00000450966 FAM50AQ14320 339 aaKnown RBP18.09■□□□□ 0.49
USP40-208ENST00000450966 CDK11BP21127 795 aaKnown RBP18.06■□□□□ 0.48
USP40-208ENST00000450966 DEKP35659 375 aaKnown RBP18.04■□□□□ 0.48
USP40-208ENST00000450966 TRIM52Q96A61 297 aa18.04■□□□□ 0.48
USP40-208ENST00000450966 TRIM44Q96DX7 344 aaPredicted RBP18.04■□□□□ 0.48
USP40-208ENST00000450966 RTN4Q9NQC3 1192 aaKnown RBP18.03■□□□□ 0.48
USP40-208ENST00000450966 NEFMP07197 916 aa18.02■□□□□ 0.48
USP40-208ENST00000450966 CSRNP3Q8WYN3 585 aa18■□□□□ 0.47
USP40-208ENST00000450966 NAP1L5Q96NT1 182 aaPredicted RBP17.97■□□□□ 0.47
USP40-208ENST00000450966 PPM1GO15355 546 aaPredicted RBP17.94■□□□□ 0.46
USP40-208ENST00000450966 DCAF1Q9Y4B6 1507 aa17.91■□□□□ 0.46
USP40-208ENST00000450966 CHMP7Q8WUX9 453 aaPredicted RBP17.89■□□□□ 0.45
USP40-208ENST00000450966 DDRGK1Q96HY6 314 aa17.89■□□□□ 0.45
USP40-208ENST00000450966 NOP58Q9Y2X3 529 aaKnown RBP17.85■□□□□ 0.45
USP40-208ENST00000450966 UPF2Q9HAU5 1272 aaKnown RBP17.82■□□□□ 0.44
USP40-208ENST00000450966 BAZ1BQ9UIG0 1483 aaKnown RBP17.81■□□□□ 0.44
USP40-208ENST00000450966 HSP90AA1P07900 732 aaKnown RBP17.81■□□□□ 0.44
USP40-208ENST00000450966 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.81■□□□□ 0.44
USP40-208ENST00000450966 ERCC6Q03468 1493 aa17.8■□□□□ 0.44
USP40-208ENST00000450966 ZNF326Q5BKZ1 582 aaKnown RBP17.8■□□□□ 0.44
USP40-208ENST00000450966 CCDC136Q96JN2 1154 aa17.78■□□□□ 0.44
USP40-208ENST00000450966 SUPT16HQ9Y5B9 1047 aaKnown RBP17.76■□□□□ 0.43
USP40-208ENST00000450966 MIER1Q8N108 512 aa17.75■□□□□ 0.43
USP40-208ENST00000450966 STAG3Q9UJ98 1225 aa17.74■□□□□ 0.43
USP40-208ENST00000450966 ZNF777Q9ULD5 760 aaPredicted RBP17.74■□□□□ 0.43
USP40-208ENST00000450966 P3H3Q8IVL6 736 aa17.73■□□□□ 0.43
USP40-208ENST00000450966 ARXQ96QS3 562 aa17.73■□□□□ 0.43
USP40-208ENST00000450966 RSPH6AQ9H0K4 717 aa17.71■□□□□ 0.43
USP40-208ENST00000450966 PODXL2Q9NZ53 605 aa17.71■□□□□ 0.43
USP40-208ENST00000450966 PKNOX2Q96KN3 472 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms