Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 HLA-H-201ENST00000383620 1096 ntBASIC12.65□□□□□ -0.38
HOXA1P49639 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 KRT18P2-201ENST00000447938 1258 ntBASIC12.65□□□□□ -0.38
HOXA1P49639 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC12.65□□□□□ -0.38
HOXA1P49639 AC145285.3-201ENST00000564603 959 ntBASIC12.65□□□□□ -0.38
HOXA1P49639 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.65□□□□□ -0.38
HOXA1P49639 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.65□□□□□ -0.38
HOXA1P49639 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXA1P49639 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 AL136982.4-201ENST00000437689 1740 ntBASIC12.65□□□□□ -0.38
HOXA1P49639 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HOXA1P49639 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
HOXA1P49639 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
HOXA1P49639 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.39
HOXA1P49639 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 CYP4F24P-201ENST00000586049 1580 ntBASIC12.64□□□□□ -0.39
HOXA1P49639 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 MIR193BHG-211ENST00000641433 5365 ntBASIC12.64□□□□□ -0.39
HOXA1P49639 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 FOXO1B-201ENST00000504678 1527 ntBASIC12.64□□□□□ -0.39
HOXA1P49639 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 TFAMP1-201ENST00000412727 736 ntBASIC12.64□□□□□ -0.39
HOXA1P49639 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 AL355306.1-201ENST00000415580 579 ntBASIC12.64□□□□□ -0.39
HOXA1P49639 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.64□□□□□ -0.39
HOXA1P49639 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 PHKG1P2-201ENST00000457537 863 ntBASIC12.64□□□□□ -0.39
HOXA1P49639 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.64□□□□□ -0.39
HOXA1P49639 IGHV3-62-201ENST00000520057 340 ntBASIC12.64□□□□□ -0.39
HOXA1P49639 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXA1P49639 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXA1P49639 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXA1P49639 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms