RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 NISCHQ9Y2I1 1504 aa46.33■■■■■ 5.01
UFD1-202ENST00000399523 ABCC9O60706 1549 aa42.51■■■■■ 4.39
UFD1-202ENST00000399523 CCDC180Q9P1Z9 1646 aa41.85■■■■■ 4.29
UFD1-202ENST00000399523 DNAJC5BQ9UF47 199 aa40.57■■■■■ 4.09
UFD1-202ENST00000399523 RB1CC1Q8TDY2 1594 aa40.18■■■■■ 4.02
UFD1-202ENST00000399523 NACADO15069 1562 aa39.76■■■■□ 3.95
UFD1-202ENST00000399523 PABPN1Q86U42 306 aaKnown RBP eCLIP39.48■■■■□ 3.91
UFD1-202ENST00000399523 DCAF8L2P0C7V8 631 aa39.33■■■■□ 3.89
UFD1-202ENST00000399523 UNC13AQ9UPW8 1703 aa39.26■■■■□ 3.87
UFD1-202ENST00000399523 BICRAQ9NZM4 1560 aa39.06■■■■□ 3.84
UFD1-202ENST00000399523 MYO15BQ96JP2 1530 aa39.03■■■■□ 3.84
UFD1-202ENST00000399523 SHROOM4Q9ULL8 1493 aa38.48■■■■□ 3.75
UFD1-202ENST00000399523 CECR2Q9BXF3 1484 aa38.39■■■■□ 3.74
UFD1-202ENST00000399523 CC2D2AQ9P2K1 1620 aa38.38■■■■□ 3.74
UFD1-202ENST00000399523 DCAF1Q9Y4B6 1507 aa38.26■■■■□ 3.72
UFD1-202ENST00000399523 ZCCHC6Q5VYS8 1495 aaKnown RBP38.23■■■■□ 3.71
UFD1-202ENST00000399523 EIF4G1Q04637 1599 aaKnown RBP38.14■■■■□ 3.7
UFD1-202ENST00000399523 SCRIBQ14160 1630 aa38.04■■■■□ 3.68
UFD1-202ENST00000399523 DNAJC5Q9H3Z4 198 aa37.78■■■■□ 3.64
UFD1-202ENST00000399523 CUX2O14529 1486 aa36.97■■■■□ 3.51
UFD1-202ENST00000399523 NCAPD3P42695 1498 aa36.75■■■■□ 3.47
UFD1-202ENST00000399523 ERCC6Q03468 1493 aa36.74■■■■□ 3.47
UFD1-202ENST00000399523 ATAD2BQ9ULI0 1458 aa36.5■■■■□ 3.43
UFD1-202ENST00000399523 HMGXB3Q12766 1538 aa36.37■■■■□ 3.41
UFD1-202ENST00000399523 SMARCA2P51531 1590 aa36.35■■■■□ 3.41
UFD1-202ENST00000399523 NESP48681 1621 aa36.33■■■■□ 3.41
UFD1-202ENST00000399523 SMARCA4P51532 1647 aa36.26■■■■□ 3.39
UFD1-202ENST00000399523 THOC2Q8NI27 1593 aaKnown RBP36.1■■■■□ 3.37
UFD1-202ENST00000399523 BAZ1BQ9UIG0 1483 aaKnown RBP36.08■■■■□ 3.37
UFD1-202ENST00000399523 BAZ1AQ9NRL2 1556 aaPredicted RBP35.98■■■■□ 3.35
UFD1-202ENST00000399523 LAMC3Q9Y6N6 1575 aa35.98■■■■□ 3.35
UFD1-202ENST00000399523 PEG3Q9GZU2 1588 aa35.96■■■■□ 3.35
UFD1-202ENST00000399523 KIF21AQ7Z4S6 1674 aa35.81■■■■□ 3.32
UFD1-202ENST00000399523 PDS5BQ9NTI5 1447 aa35.81■■■■□ 3.32
UFD1-202ENST00000399523 TRIM41Q8WV44 630 aa35.73■■■■□ 3.31
UFD1-202ENST00000399523 MROH2BQ7Z745 1585 aa35.67■■■■□ 3.3
UFD1-202ENST00000399523 CADPSQ9ULU8 1353 aa35.57■■■■□ 3.28
UFD1-202ENST00000399523 MRC2Q9UBG0 1479 aa35.52■■■■□ 3.28
UFD1-202ENST00000399523 WDR62O43379 1518 aa35.47■■■■□ 3.27
UFD1-202ENST00000399523 CEP164Q9UPV0 1460 aa35.23■■■■□ 3.23
UFD1-202ENST00000399523 WIZO95785 1651 aa35.17■■■■□ 3.22
UFD1-202ENST00000399523 OSCARQ8IYS5 282 aa35.17■■■■□ 3.22
UFD1-202ENST00000399523 FANCD2Q9BXW9 1451 aa35.14■■■■□ 3.22
UFD1-202ENST00000399523 CFTRP13569 1480 aa35.03■■■■□ 3.2
UFD1-202ENST00000399523 URB2Q14146 1524 aaKnown RBP34.91■■■■□ 3.18
UFD1-202ENST00000399523 RIMBP3CA6NJZ7 1639 aa34.75■■■■□ 3.15
UFD1-202ENST00000399523 RIMBP3BA6NNM3 1639 aa34.75■■■■□ 3.15
UFD1-202ENST00000399523 RIMBP3Q9UFD9 1639 aa34.75■■■■□ 3.15
UFD1-202ENST00000399523 TOP2AP11388 1531 aaKnown RBP34.71■■■■□ 3.15
UFD1-202ENST00000399523 RSF1Q96T23 1441 aaPredicted RBP34.7■■■■□ 3.15
UFD1-202ENST00000399523 ARHGEF11O15085 1522 aa34.58■■■■□ 3.13
UFD1-202ENST00000399523 ZNF608Q9ULD9 1512 aaPredicted RBP34.58■■■■□ 3.13
UFD1-202ENST00000399523 IFT140Q96RY7 1462 aa34.58■■■■□ 3.13
UFD1-202ENST00000399523 PRDM2Q13029 1718 aa34.56■■■■□ 3.12
UFD1-202ENST00000399523 TOPBP1Q92547 1522 aa34.4■■■■□ 3.1
UFD1-202ENST00000399523 CYB5RLQ6IPT4 315 aa34.38■■■■□ 3.09
UFD1-202ENST00000399523 CCDC88BA6NC98 1476 aa34.34■■■■□ 3.09
UFD1-202ENST00000399523 EIF4G3O43432 1585 aaKnown RBP34.32■■■■□ 3.09
UFD1-202ENST00000399523 ABCC8Q09428 1581 aa34.31■■■■□ 3.08
UFD1-202ENST00000399523 DNMBPQ6XZF7 1577 aa34.2■■■■□ 3.07
UFD1-202ENST00000399523 ARAP1Q96P48 1450 aa34.2■■■■□ 3.06
UFD1-202ENST00000399523 CHD1O14646 1710 aa34.19■■■■□ 3.06
UFD1-202ENST00000399523 AQRO60306 1485 aaKnown RBP eCLIP34.19■■■■□ 3.061e-7■■■■■ 26.8
UFD1-202ENST00000399523 TRHP20396 242 aaPredicted RBP34.18■■■■□ 3.06
UFD1-202ENST00000399523 TARBP1Q13395 1621 aaKnown RBP34.15■■■■□ 3.06
UFD1-202ENST00000399523 FBLN2P98095 1184 aa34.06■■■■□ 3.04
UFD1-202ENST00000399523 POLA1P09884 1462 aaPredicted RBP34.01■■■■□ 3.03
UFD1-202ENST00000399523 RAD54L2Q9Y4B4 1467 aa33.88■■■■□ 3.01
UFD1-202ENST00000399523 TDRD9Q8NDG6 1382 aaKnown RBP33.86■■■■□ 3.01
UFD1-202ENST00000399523 SOGA1O94964 1423 aa33.85■■■■□ 3.01
UFD1-202ENST00000399523 CLASP1Q7Z460 1538 aa33.84■■■■□ 3.01
UFD1-202ENST00000399523 SNAPC4Q5SXM2 1469 aa33.79■■■■□ 3
UFD1-202ENST00000399523 WDR97A6NE52 1622 aa33.77■■■■□ 3
UFD1-202ENST00000399523 CHMP7Q8WUX9 453 aaPredicted RBP33.73■■■□□ 2.99
UFD1-202ENST00000399523 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
UFD1-202ENST00000399523 MAGI1Q96QZ7 1491 aaPredicted RBP33.71■■■□□ 2.99
UFD1-202ENST00000399523 AEBP2Q6ZN18 517 aaPredicted RBP33.7■■■□□ 2.99
UFD1-202ENST00000399523 FGD5Q6ZNL6 1462 aa33.68■■■□□ 2.98
UFD1-202ENST00000399523 GRIN2BQ13224 1484 aa33.63■■■□□ 2.97
UFD1-202ENST00000399523 SYNJ2O15056 1496 aa33.61■■■□□ 2.97
UFD1-202ENST00000399523 CUX1P39880 1505 aa33.55■■■□□ 2.96
UFD1-202ENST00000399523 GAPVD1Q14C86 1478 aa33.51■■■□□ 2.96
UFD1-202ENST00000399523 PBRM1Q86U86 1689 aa33.4■■■□□ 2.94
UFD1-202ENST00000399523 ABCA10Q8WWZ4 1543 aa33.29■■■□□ 2.92
UFD1-202ENST00000399523 ABCA5Q8WWZ7 1642 aa33.28■■■□□ 2.92
UFD1-202ENST00000399523 ERCC6L2Q5T890 1561 aa33.23■■■□□ 2.91
UFD1-202ENST00000399523 GRIN2AQ12879 1464 aa33.19■■■□□ 2.9
UFD1-202ENST00000399523 CEP170Q5SW79 1584 aa33.13■■■□□ 2.89
UFD1-202ENST00000399523 NUP160Q12769 1436 aa33.13■■■□□ 2.89
UFD1-202ENST00000399523 ADAMTS12P58397 1594 aa33.06■■■□□ 2.88
UFD1-202ENST00000399523 SHROOM2Q13796 1616 aa33.05■■■□□ 2.88
UFD1-202ENST00000399523 WRNQ14191 1432 aaPredicted RBP eCLIP33.01■■■□□ 2.87
UFD1-202ENST00000399523 KIF13AQ9H1H9 1805 aa32.98■■■□□ 2.87
UFD1-202ENST00000399523 FHAD1B1AJZ9 1412 aa32.97■■■□□ 2.87
UFD1-202ENST00000399523 ERICH3Q5RHP9 1530 aa32.85■■■□□ 2.85
UFD1-202ENST00000399523 PRG4Q92954 1404 aaPredicted RBP32.85■■■□□ 2.85
UFD1-202ENST00000399523 TOP2BQ02880 1626 aa32.82■■■□□ 2.84
UFD1-202ENST00000399523 BIVM-ERCC5R4GMW8 1640 aa32.82■■■□□ 2.84
UFD1-202ENST00000399523 JPH4Q96JJ6 628 aa32.8■■■□□ 2.84
UFD1-202ENST00000399523 ABCC10Q5T3U5 1492 aa32.75■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms