Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 MRPL37P1-201ENST00000592451 1337 ntBASIC17.58■□□□□ 0.4
COL4A5P29400 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
COL4A5P29400 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A5P29400 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC17.58■□□□□ 0.4
COL4A5P29400 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC17.58■□□□□ 0.4
COL4A5P29400 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC17.58■□□□□ 0.4
COL4A5P29400 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A5P29400 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A5P29400 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC17.58■□□□□ 0.4
COL4A5P29400 NAA40-205ENST00000539656 577 ntTSL 4 BASIC17.58■□□□□ 0.4
COL4A5P29400 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
COL4A5P29400 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC17.58■□□□□ 0.4
COL4A5P29400 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A5P29400 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
COL4A5P29400 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
COL4A5P29400 AC139712.1-201ENST00000378256 1875 ntBASIC17.57■□□□□ 0.4
COL4A5P29400 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A5P29400 CICP23-201ENST00000605013 2741 ntBASIC17.57■□□□□ 0.4
COL4A5P29400 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A5P29400 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 FAM86KP-201ENST00000509817 987 ntBASIC17.57■□□□□ 0.4
COL4A5P29400 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A5P29400 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A5P29400 AL118522.1-201ENST00000611368 560 ntBASIC17.57■□□□□ 0.4
COL4A5P29400 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A5P29400 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A5P29400 AC006372.4-201ENST00000624122 1543 ntBASIC17.56■□□□□ 0.4
COL4A5P29400 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A5P29400 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL4A5P29400 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A5P29400 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A5P29400 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A5P29400 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL4A5P29400 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
COL4A5P29400 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
COL4A5P29400 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A5P29400 CSNK1G2P1-201ENST00000442675 955 ntBASIC17.56■□□□□ 0.4
COL4A5P29400 AL135901.1-201ENST00000451812 333 ntBASIC17.56■□□□□ 0.4
COL4A5P29400 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A5P29400 AC244197.1-201ENST00000456494 951 ntBASIC17.56■□□□□ 0.4
COL4A5P29400 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A5P29400 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC17.56■□□□□ 0.4
COL4A5P29400 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC17.56■□□□□ 0.4
COL4A5P29400 HMGB1P24-201ENST00000611897 328 ntBASIC17.56■□□□□ 0.4
COL4A5P29400 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 HELLS-212ENST00000630929 400 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A5P29400 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A5P29400 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A5P29400 LINC00528-201ENST00000600723 2160 ntBASIC17.56■□□□□ 0.4
COL4A5P29400 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A5P29400 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms