Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.71■□□□□ 0.91
RAF1P04049 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RAF1P04049 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RAF1P04049 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
RAF1P04049 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RAF1P04049 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RAF1P04049 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
RAF1P04049 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RAF1P04049 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
RAF1P04049 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RAF1P04049 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RAF1P04049 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RAF1P04049 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RAF1P04049 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.69■□□□□ 0.9
RAF1P04049 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RAF1P04049 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RAF1P04049 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RAF1P04049 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.69■□□□□ 0.9
RAF1P04049 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
RAF1P04049 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RAF1P04049 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RAF1P04049 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RAF1P04049 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RAF1P04049 UNC93B8-201ENST00000511903 705 ntBASIC20.68■□□□□ 0.9
RAF1P04049 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RAF1P04049 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
RAF1P04049 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RAF1P04049 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.68■□□□□ 0.9
RAF1P04049 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RAF1P04049 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RAF1P04049 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RAF1P04049 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RAF1P04049 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RAF1P04049 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RAF1P04049 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.67■□□□□ 0.9
RAF1P04049 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RAF1P04049 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RAF1P04049 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RAF1P04049 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RAF1P04049 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RAF1P04049 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RAF1P04049 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.66■□□□□ 0.9
RAF1P04049 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
RAF1P04049 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RAF1P04049 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.66■□□□□ 0.9
RAF1P04049 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.65■□□□□ 0.9
RAF1P04049 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RAF1P04049 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.65■□□□□ 0.9
RAF1P04049 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.65■□□□□ 0.9
RAF1P04049 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RAF1P04049 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
RAF1P04049 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.64■□□□□ 0.9
RAF1P04049 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
RAF1P04049 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.64■□□□□ 0.89
RAF1P04049 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
RAF1P04049 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.64■□□□□ 0.89
RAF1P04049 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RAF1P04049 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.64■□□□□ 0.89
RAF1P04049 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
RAF1P04049 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
RAF1P04049 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAF1P04049 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAF1P04049 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAF1P04049 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAF1P04049 KRT18P24-201ENST00000344739 1156 ntBASIC20.63■□□□□ 0.89
RAF1P04049 MIR638-201ENST00000385237 100 ntBASIC20.63■□□□□ 0.89
RAF1P04049 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAF1P04049 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RAF1P04049 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RAF1P04049 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.63■□□□□ 0.89
RAF1P04049 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RAF1P04049 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.62■□□□□ 0.89
RAF1P04049 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RAF1P04049 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RAF1P04049 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.62■□□□□ 0.89
RAF1P04049 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RAF1P04049 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RAF1P04049 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.62■□□□□ 0.89
RAF1P04049 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.62■□□□□ 0.89
RAF1P04049 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.62■□□□□ 0.89
RAF1P04049 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RAF1P04049 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RAF1P04049 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RAF1P04049 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RAF1P04049 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RAF1P04049 TSPY9P-201ENST00000440215 945 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms