Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.36□□□□□ -0.27
CX3CR1P49238 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CX3CR1P49238 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.36□□□□□ -0.27
CX3CR1P49238 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.36□□□□□ -0.27
CX3CR1P49238 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC13.36□□□□□ -0.27
CX3CR1P49238 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 AC004890.2-204ENST00000481968 304 ntBASIC13.36□□□□□ -0.27
CX3CR1P49238 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.36□□□□□ -0.27
CX3CR1P49238 AC104794.3-201ENST00000566840 1248 ntBASIC13.36□□□□□ -0.27
CX3CR1P49238 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.36□□□□□ -0.27
CX3CR1P49238 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 AC126335.2-201ENST00000623362 4637 ntBASIC13.36□□□□□ -0.27
CX3CR1P49238 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.36□□□□□ -0.27
CX3CR1P49238 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.36□□□□□ -0.27
CX3CR1P49238 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CX3CR1P49238 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CX3CR1P49238 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CX3CR1P49238 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.35□□□□□ -0.27
CX3CR1P49238 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC13.35□□□□□ -0.27
CX3CR1P49238 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.35□□□□□ -0.27
CX3CR1P49238 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.35□□□□□ -0.27
CX3CR1P49238 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 AL391069.4-201ENST00000609583 481 ntBASIC13.35□□□□□ -0.27
CX3CR1P49238 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CR1P49238 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.35□□□□□ -0.27
CX3CR1P49238 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.35□□□□□ -0.27
CX3CR1P49238 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CR1P49238 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
CX3CR1P49238 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms