Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC39Q9UFE4 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 AC084364.1-201ENST00000551967 1556 ntBASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 AC015922.1-201ENST00000421102 1152 ntBASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 AC092580.3-201ENST00000430932 139 ntBASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 IGHV3-42-201ENST00000520410 361 ntBASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC39Q9UFE4 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AL590560.3-201ENST00000623350 461 ntBASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AC097359.2-201ENST00000604992 2389 ntBASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AC100757.3-201ENST00000622361 1406 ntBASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC39Q9UFE4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms