Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 TMCO5B-205ENST00000530020 894 ntBASIC16.82■□□□□ 0.28
COL11A1P12107 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
COL11A1P12107 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL11A1P12107 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.82■□□□□ 0.28
COL11A1P12107 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.82■□□□□ 0.28
COL11A1P12107 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
COL11A1P12107 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.82■□□□□ 0.28
COL11A1P12107 STK26-204ENST00000481105 1835 ntTSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
COL11A1P12107 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.82■□□□□ 0.28
COL11A1P12107 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.82■□□□□ 0.28
COL11A1P12107 PHBP15-201ENST00000574228 665 ntBASIC16.82■□□□□ 0.28
COL11A1P12107 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 MIR6727-201ENST00000620702 65 ntBASIC16.82■□□□□ 0.28
COL11A1P12107 AC005618.3-201ENST00000624928 458 ntBASIC16.82■□□□□ 0.28
COL11A1P12107 AC006504.5-208ENST00000588784 2401 ntBASIC16.82■□□□□ 0.28
COL11A1P12107 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL11A1P12107 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
COL11A1P12107 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.81■□□□□ 0.28
COL11A1P12107 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.81■□□□□ 0.28
COL11A1P12107 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.81■□□□□ 0.28
COL11A1P12107 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL11A1P12107 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL11A1P12107 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 AL583805.1-201ENST00000391389 531 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 HNRNPA1P27-201ENST00000412087 955 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.81■□□□□ 0.28
COL11A1P12107 RPS9P1-201ENST00000419943 583 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.81■□□□□ 0.28
COL11A1P12107 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16.81■□□□□ 0.28
COL11A1P12107 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.81■□□□□ 0.28
COL11A1P12107 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.81■□□□□ 0.28
COL11A1P12107 MPRIPP1-201ENST00000452433 1089 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 FTH1P22-201ENST00000456305 520 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC16.81■□□□□ 0.28
COL11A1P12107 MIR4522-201ENST00000584932 87 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COL11A1P12107 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 AHCYP4-201ENST00000419201 1315 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 MRPL37P1-201ENST00000592451 1337 ntBASIC16.81■□□□□ 0.28
COL11A1P12107 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL11A1P12107 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.81■□□□□ 0.28
COL11A1P12107 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
COL11A1P12107 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.8■□□□□ 0.28
COL11A1P12107 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.8■□□□□ 0.28
COL11A1P12107 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.8■□□□□ 0.28
COL11A1P12107 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
COL11A1P12107 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.8■□□□□ 0.28
COL11A1P12107 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 CD164-210ENST00000512821 964 ntTSL 2 BASIC16.8■□□□□ 0.28
COL11A1P12107 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.8■□□□□ 0.28
COL11A1P12107 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC16.8■□□□□ 0.28
COL11A1P12107 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.8■□□□□ 0.28
COL11A1P12107 RN7SL736P-201ENST00000613111 269 ntBASIC16.8■□□□□ 0.28
COL11A1P12107 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 CICP6-201ENST00000457191 2729 ntBASIC16.8■□□□□ 0.28
COL11A1P12107 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL11A1P12107 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms