RNA–Protein interactions for RNA: ENST00000442515.5

LINC00642-202, long intergenic non-protein coding RNA 642, humanhuman

TSL 3 BASIC

Gene LINC00642, Length 670 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-202ENST00000442515 NISCHQ9Y2I1 1504 aa35.88■■■■□ 3.33
LINC00642-202ENST00000442515 ABCC9O60706 1549 aa33.09■■■□□ 2.89
LINC00642-202ENST00000442515 CCDC180Q9P1Z9 1646 aa32.39■■■□□ 2.78
LINC00642-202ENST00000442515 DNAJC5BQ9UF47 199 aa31.6■■■□□ 2.65
LINC00642-202ENST00000442515 RB1CC1Q8TDY2 1594 aa31.17■■■□□ 2.58
LINC00642-202ENST00000442515 NACADO15069 1562 aa30.82■■■□□ 2.52
LINC00642-202ENST00000442515 PABPN1Q86U42 306 aaKnown RBP eCLIP30.72■■■□□ 2.51
LINC00642-202ENST00000442515 DCAF8L2P0C7V8 631 aa30.54■■■□□ 2.48
LINC00642-202ENST00000442515 UNC13AQ9UPW8 1703 aa30.36■■■□□ 2.45
LINC00642-202ENST00000442515 BICRAQ9NZM4 1560 aa30.3■■■□□ 2.44
LINC00642-202ENST00000442515 MYO15BQ96JP2 1530 aa30.21■■■□□ 2.43
LINC00642-202ENST00000442515 CECR2Q9BXF3 1484 aa29.88■■■□□ 2.37
LINC00642-202ENST00000442515 SHROOM4Q9ULL8 1493 aa29.86■■■□□ 2.37
LINC00642-202ENST00000442515 CC2D2AQ9P2K1 1620 aa29.82■■■□□ 2.36
LINC00642-202ENST00000442515 ZCCHC6Q5VYS8 1495 aaKnown RBP29.63■■■□□ 2.33
LINC00642-202ENST00000442515 EIF4G1Q04637 1599 aaKnown RBP29.63■■■□□ 2.33
LINC00642-202ENST00000442515 DCAF1Q9Y4B6 1507 aa29.59■■■□□ 2.33
LINC00642-202ENST00000442515 SCRIBQ14160 1630 aa29.54■■■□□ 2.32
LINC00642-202ENST00000442515 DNAJC5Q9H3Z4 198 aa29.44■■■□□ 2.3
LINC00642-202ENST00000442515 CUX2O14529 1486 aa28.77■■■□□ 2.2
LINC00642-202ENST00000442515 ERCC6Q03468 1493 aa28.61■■■□□ 2.17
LINC00642-202ENST00000442515 NCAPD3P42695 1498 aa28.49■■■□□ 2.15
LINC00642-202ENST00000442515 ATAD2BQ9ULI0 1458 aa28.34■■■□□ 2.13
LINC00642-202ENST00000442515 NESP48681 1621 aa28.25■■■□□ 2.11
LINC00642-202ENST00000442515 HMGXB3Q12766 1538 aa28.22■■■□□ 2.11
LINC00642-202ENST00000442515 SMARCA2P51531 1590 aa28.18■■■□□ 2.1
LINC00642-202ENST00000442515 SMARCA4P51532 1647 aa28.1■■■□□ 2.09
LINC00642-202ENST00000442515 THOC2Q8NI27 1593 aaKnown RBP28.07■■■□□ 2.08
LINC00642-202ENST00000442515 BAZ1BQ9UIG0 1483 aaKnown RBP28.01■■■□□ 2.07
LINC00642-202ENST00000442515 TRIM41Q8WV44 630 aa27.92■■■□□ 2.06
LINC00642-202ENST00000442515 LAMC3Q9Y6N6 1575 aa27.9■■■□□ 2.06
LINC00642-202ENST00000442515 BAZ1AQ9NRL2 1556 aaPredicted RBP27.88■■■□□ 2.05
LINC00642-202ENST00000442515 PEG3Q9GZU2 1588 aa27.84■■■□□ 2.05
LINC00642-202ENST00000442515 PDS5BQ9NTI5 1447 aa27.81■■■□□ 2.04
LINC00642-202ENST00000442515 KIF21AQ7Z4S6 1674 aa27.77■■■□□ 2.04
LINC00642-202ENST00000442515 MROH2BQ7Z745 1585 aa27.65■■■□□ 2.02
LINC00642-202ENST00000442515 MRC2Q9UBG0 1479 aa27.61■■■□□ 2.01
LINC00642-202ENST00000442515 CADPSQ9ULU8 1353 aa27.6■■■□□ 2.01
LINC00642-202ENST00000442515 WDR62O43379 1518 aa27.56■■■□□ 2
LINC00642-202ENST00000442515 CEP164Q9UPV0 1460 aa27.38■■□□□ 1.97
LINC00642-202ENST00000442515 OSCARQ8IYS5 282 aa27.32■■□□□ 1.96
LINC00642-202ENST00000442515 FANCD2Q9BXW9 1451 aa27.29■■□□□ 1.96
LINC00642-202ENST00000442515 WIZO95785 1651 aa27.23■■□□□ 1.95
LINC00642-202ENST00000442515 CFTRP13569 1480 aa27.16■■□□□ 1.94
LINC00642-202ENST00000442515 URB2Q14146 1524 aaKnown RBP27.11■■□□□ 1.93
LINC00642-202ENST00000442515 RIMBP3CA6NJZ7 1639 aa27.02■■□□□ 1.92
LINC00642-202ENST00000442515 RIMBP3BA6NNM3 1639 aa27.02■■□□□ 1.92
LINC00642-202ENST00000442515 RIMBP3Q9UFD9 1639 aa27.02■■□□□ 1.92
LINC00642-202ENST00000442515 ARHGEF11O15085 1522 aa26.92■■□□□ 1.9
LINC00642-202ENST00000442515 TOP2AP11388 1531 aaKnown RBP26.9■■□□□ 1.9
LINC00642-202ENST00000442515 ZNF608Q9ULD9 1512 aaPredicted RBP26.89■■□□□ 1.89
LINC00642-202ENST00000442515 RSF1Q96T23 1441 aaPredicted RBP26.86■■□□□ 1.89
LINC00642-202ENST00000442515 IFT140Q96RY7 1462 aa26.85■■□□□ 1.89
LINC00642-202ENST00000442515 CYB5RLQ6IPT4 315 aa26.75■■□□□ 1.87
LINC00642-202ENST00000442515 TOPBP1Q92547 1522 aa26.7■■□□□ 1.86
LINC00642-202ENST00000442515 EIF4G3O43432 1585 aaKnown RBP26.67■■□□□ 1.86
LINC00642-202ENST00000442515 PRDM2Q13029 1718 aa26.67■■□□□ 1.86
LINC00642-202ENST00000442515 TRHP20396 242 aaPredicted RBP26.64■■□□□ 1.86
LINC00642-202ENST00000442515 ARAP1Q96P48 1450 aa26.63■■□□□ 1.85
LINC00642-202ENST00000442515 CCDC88BA6NC98 1476 aa26.6■■□□□ 1.85
LINC00642-202ENST00000442515 ABCC8Q09428 1581 aa26.56■■□□□ 1.84
LINC00642-202ENST00000442515 AQRO60306 1485 aaKnown RBP eCLIP26.55■■□□□ 1.84
LINC00642-202ENST00000442515 DNMBPQ6XZF7 1577 aa26.53■■□□□ 1.84
LINC00642-202ENST00000442515 CHD1O14646 1710 aa26.51■■□□□ 1.83
LINC00642-202ENST00000442515 FBLN2P98095 1184 aa26.49■■□□□ 1.83
LINC00642-202ENST00000442515 TARBP1Q13395 1621 aaKnown RBP26.47■■□□□ 1.83
LINC00642-202ENST00000442515 POLA1P09884 1462 aaPredicted RBP26.4■■□□□ 1.82
LINC00642-202ENST00000442515 RAD54L2Q9Y4B4 1467 aa26.32■■□□□ 1.8
LINC00642-202ENST00000442515 AEBP2Q6ZN18 517 aaPredicted RBP26.31■■□□□ 1.8
LINC00642-202ENST00000442515 TDRD9Q8NDG6 1382 aaKnown RBP26.3■■□□□ 1.8
LINC00642-202ENST00000442515 CLASP1Q7Z460 1538 aa26.29■■□□□ 1.8
LINC00642-202ENST00000442515 SNAPC4Q5SXM2 1469 aa26.28■■□□□ 1.8
LINC00642-202ENST00000442515 SOGA1O94964 1423 aa26.24■■□□□ 1.79
LINC00642-202ENST00000442515 CHMP7Q8WUX9 453 aaPredicted RBP26.19■■□□□ 1.78
LINC00642-202ENST00000442515 SYNJ1O43426 1573 aa26.19■■□□□ 1.78
LINC00642-202ENST00000442515 MAGI1Q96QZ7 1491 aaPredicted RBP26.16■■□□□ 1.78
LINC00642-202ENST00000442515 WDR97A6NE52 1622 aa26.15■■□□□ 1.78
LINC00642-202ENST00000442515 FGD5Q6ZNL6 1462 aa26.14■■□□□ 1.78
LINC00642-202ENST00000442515 GRIN2BQ13224 1484 aa26.1■■□□□ 1.77
LINC00642-202ENST00000442515 SYNJ2O15056 1496 aa26.09■■□□□ 1.77
LINC00642-202ENST00000442515 GAPVD1Q14C86 1478 aa26.06■■□□□ 1.76
LINC00642-202ENST00000442515 CUX1P39880 1505 aa26.02■■□□□ 1.76
LINC00642-202ENST00000442515 PBRM1Q86U86 1689 aa25.86■■□□□ 1.73
LINC00642-202ENST00000442515 ERCC6L2Q5T890 1561 aa25.84■■□□□ 1.73
LINC00642-202ENST00000442515 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
LINC00642-202ENST00000442515 ABCA5Q8WWZ7 1642 aa25.8■■□□□ 1.72
LINC00642-202ENST00000442515 GRIN2AQ12879 1464 aa25.77■■□□□ 1.72
LINC00642-202ENST00000442515 NUP160Q12769 1436 aa25.72■■□□□ 1.71
LINC00642-202ENST00000442515 CEP170Q5SW79 1584 aa25.72■■□□□ 1.71
LINC00642-202ENST00000442515 ADAMTS12P58397 1594 aa25.67■■□□□ 1.7
LINC00642-202ENST00000442515 SHROOM2Q13796 1616 aa25.62■■□□□ 1.69
LINC00642-202ENST00000442515 WRNQ14191 1432 aaPredicted RBP eCLIP25.58■■□□□ 1.69
LINC00642-202ENST00000442515 FHAD1B1AJZ9 1412 aa25.57■■□□□ 1.68
LINC00642-202ENST00000442515 KIF13AQ9H1H9 1805 aa25.55■■□□□ 1.68
LINC00642-202ENST00000442515 PRG4Q92954 1404 aaPredicted RBP25.51■■□□□ 1.67
LINC00642-202ENST00000442515 ABCC10Q5T3U5 1492 aa25.47■■□□□ 1.67
LINC00642-202ENST00000442515 FAM69CQ0P6D2 419 aa25.46■■□□□ 1.67
LINC00642-202ENST00000442515 ERICH3Q5RHP9 1530 aa25.45■■□□□ 1.66
LINC00642-202ENST00000442515 JPH4Q96JJ6 628 aa25.42■■□□□ 1.66
LINC00642-202ENST00000442515 TOP2BQ02880 1626 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms