Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
AP4E1Q9UPM8 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.81■□□□□ 0.12
AP4E1Q9UPM8 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 AL139094.1-201ENST00000405549 1188 ntBASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 AC106881.1-201ENST00000605849 3329 ntBASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.8■□□□□ 0.12
AP4E1Q9UPM8 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 KRT8P14-201ENST00000414254 1442 ntBASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 CLUHP6-201ENST00000580789 941 ntBASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 AL033527.5-201ENST00000641382 801 ntBASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
AP4E1Q9UPM8 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
AP4E1Q9UPM8 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms