Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 DAD1-205ENST00000543337 501 ntTSL 3 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TIMM17BP1-201ENST00000545713 516 ntBASIC11.47□□□□□ -0.57
LINC00477Q96M19 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 INO80C-210ENST00000590757 595 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 INTS4P1-203ENST00000641008 3683 ntBASIC11.47□□□□□ -0.57
LINC00477Q96M19 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 AC005912.2-201ENST00000619492 2400 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 AC140479.7-201ENST00000636301 2332 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 HNRNPFP1-201ENST00000391730 1133 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 HLA-J-203ENST00000494367 1087 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 DHDH-204ENST00000523250 634 ntTSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 SNHG9-202ENST00000564014 471 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 AC051619.7-201ENST00000568314 623 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 SAMD11P1-201ENST00000571429 661 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 LINC01115-203ENST00000606068 577 ntBASIC11.46□□□□□ -0.57
LINC00477Q96M19 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 RAB34-223ENST00000636154 730 ntTSL 2 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
LINC00477Q96M19 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00477Q96M19 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 PID1-202ENST00000392054 2745 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00477Q96M19 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00477Q96M19 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00477Q96M19 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00477Q96M19 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
LINC00477Q96M19 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC11.46□□□□□ -0.58
LINC00477Q96M19 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC11.46□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms