Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 PHKG1P2-201ENST00000457537 863 ntBASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 SLC25A39P2-201ENST00000537614 270 ntBASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AP000842.3-202ENST00000569238 1080 ntBASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC015911.4-201ENST00000588022 1070 ntBASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC093512.1-201ENST00000617969 520 ntBASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 Z92544.3-201ENST00000624747 417 ntBASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TUBB3P1-201ENST00000405796 1332 ntBASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 BX640514.1-201ENST00000583223 1918 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AL359183.1-201ENST00000623796 2132 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 FAM58DP-201ENST00000428076 619 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 HMGB3P14-201ENST00000494195 599 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 RNA5SP421-201ENST00000516864 134 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 ALG1L8P-201ENST00000533887 760 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AC084121.4-201ENST00000641598 221 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AF228730.8-201ENST00000642140 221 ntBASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
DEPDC4Q8N2C3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms