Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 EEF1D-215ENST00000526340 770 ntTSL 318.41■□□□□ 0.542e-9■□□□□ 9.7
YBX3P16989 EEF1D-247ENST00000533204 842 ntTSL 218.26■□□□□ 0.511e-9■□□□□ 9.7
YBX3P16989 EEF1D-234ENST00000530616 749 ntTSL 318.02■□□□□ 0.481e-9■□□□□ 9.7
YBX3P16989 EEF1D-236ENST00000531218 787 ntTSL 318.02■□□□□ 0.481e-9■□□□□ 9.7
YBX3P16989 EEF1D-253ENST00000534380 1001 ntTSL 518.02■□□□□ 0.488e-10■□□□□ 9.7
YBX3P16989 EEF1D-248ENST00000533494 758 ntTSL 517.33■□□□□ 0.361e-9■□□□□ 9.7
YBX3P16989 SREBF2-207ENST00000490262 450 ntTSL 216.09■□□□□ 0.172e-8■□□□□ 9.7
YBX3P16989 EEF1D-226ENST00000529516 473 ntTSL 313.22□□□□□ -0.291e-9■□□□□ 9.7
YBX3P16989 GFM2-201ENST00000296805 3249 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.679e-7■□□□□ 9.7
YBX3P16989 GFM2-202ENST00000345239 2856 ntTSL 1 (best) BASIC10.82□□□□□ -0.689e-7■□□□□ 9.7
YBX3P16989 GFM2-207ENST00000509430 3047 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.839e-7■□□□□ 9.7
YBX3P16989 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.792e-6■□□□□ 9.7
YBX3P16989 ZNF217-202ENST00000371471 5796 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.822e-6■□□□□ 9.7
YBX3P16989 TCP1-205ENST00000536394 535 ntTSL 48.76□□□□□ -1.013e-12■□□□□ 9.7
YBX3P16989 LMAN2-206ENST00000513877 823 ntTSL 221.79■■□□□ 1.081e-8■□□□□ 9.7
YBX3P16989 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.445e-7■□□□□ 9.7
YBX3P16989 SMPD4-205ENST00000431183 3614 ntTSL 2 BASIC12.87□□□□□ -0.355e-7■□□□□ 9.7
YBX3P16989 SMPD4-213ENST00000454468 3586 ntTSL 1 (best)12.48□□□□□ -0.415e-7■□□□□ 9.7
YBX3P16989 SMPD4-209ENST00000439886 3371 ntTSL 211.65□□□□□ -0.545e-7■□□□□ 9.7
YBX3P16989 SMPD4-203ENST00000412570 3601 ntTSL 211.35□□□□□ -0.595e-7■□□□□ 9.7
YBX3P16989 SMPD4-206ENST00000433118 3335 ntTSL 511.3□□□□□ -0.65e-7■□□□□ 9.7
YBX3P16989 SMPD4-201ENST00000351288 3661 ntTSL 2 BASIC11.02□□□□□ -0.655e-7■□□□□ 9.7
YBX3P16989 CKB-203ENST00000553610 542 ntTSL 322.52■■□□□ 1.23e-24■□□□□ 9.7
YBX3P16989 CKB-210ENST00000554989 625 ntTSL 220.14■□□□□ 0.813e-24■□□□□ 9.7
YBX3P16989 HADHA-202ENST00000461025 431 ntTSL 314.54□□□□□ -0.081e-12■□□□□ 9.7
YBX3P16989 ANP32A-208ENST00000495420 707 ntTSL 223.93■■□□□ 1.423e-19■□□□□ 9.7
YBX3P16989 ANP32A-211ENST00000561430 508 ntTSL 222.43■■□□□ 1.183e-19■□□□□ 9.7
YBX3P16989 RPS3-206ENST00000526248 771 ntTSL 521.25■□□□□ 0.996e-77■□□□□ 9.7
YBX3P16989 ANP32A-209ENST00000495764 504 ntTSL 520.91■□□□□ 0.943e-19■□□□□ 9.7
YBX3P16989 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.96■□□□□ 0.796e-77■□□□□ 9.7
YBX3P16989 ANP32A-201ENST00000267918 1084 ntTSL 319.55■□□□□ 0.723e-19■□□□□ 9.7
YBX3P16989 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.553e-19■□□□□ 9.7
YBX3P16989 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.533e-19■□□□□ 9.7
YBX3P16989 RPS3-216ENST00000530721 796 ntTSL 317.32■□□□□ 0.366e-77■□□□□ 9.7
YBX3P16989 RPS3-218ENST00000532872 737 ntTSL 317.32■□□□□ 0.366e-77■□□□□ 9.7
YBX3P16989 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.126e-77■□□□□ 9.7
YBX3P16989 ANP32A-202ENST00000409628 2001 ntTSL 515.56■□□□□ 0.083e-19■□□□□ 9.7
YBX3P16989 RPS3-205ENST00000525933 1307 ntTSL 515.19■□□□□ 0.026e-77■□□□□ 9.7
YBX3P16989 RPS3-212ENST00000529173 1373 ntTSL 514.42□□□□□ -0.16e-77■□□□□ 9.7
YBX3P16989 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.196e-77■□□□□ 9.7
YBX3P16989 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.316e-77■□□□□ 9.7
YBX3P16989 RPS3-202ENST00000422465 903 ntTSL 212.96□□□□□ -0.336e-77■□□□□ 9.7
YBX3P16989 RPS3-207ENST00000526608 710 ntTSL 5 BASIC12.72□□□□□ -0.376e-77■□□□□ 9.7
YBX3P16989 RPS3-219ENST00000534440 564 ntTSL 2 BASIC12.56□□□□□ -0.46e-77■□□□□ 9.7
YBX3P16989 RPS3-210ENST00000528439 473 ntTSL 311.94□□□□□ -0.56e-77■□□□□ 9.7
YBX3P16989 RPS3-204ENST00000525690 421 ntTSL 311.93□□□□□ -0.56e-77■□□□□ 9.7
YBX3P16989 RPS3-215ENST00000530170 531 ntTSL 511.01□□□□□ -0.656e-77■□□□□ 9.7
YBX3P16989 ANP32A-206ENST00000483551 3711 ntTSL 59.62□□□□□ -0.873e-19■□□□□ 9.7
YBX3P16989 FLNB-205ENST00000466455 404 ntTSL 322.3■■□□□ 1.164e-9■□□□□ 9.7
YBX3P16989 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.152e-6■□□□□ 9.7
YBX3P16989 ANXA1-205ENST00000468639 800 ntTSL 210.44□□□□□ -0.748e-26■□□□□ 9.7
YBX3P16989 ANXA1-203ENST00000415424 526 ntTSL 45.78□□□□□ -1.488e-26■□□□□ 9.7
YBX3P16989 ANXA1-204ENST00000456643 799 ntTSL 55.57□□□□□ -1.528e-26■□□□□ 9.7
YBX3P16989 CKB-207ENST00000554282 735 ntTSL 227.24■■□□□ 1.951e-9■□□□□ 9.7
YBX3P16989 CKB-202ENST00000553528 1170 ntTSL 221.8■■□□□ 1.081e-9■□□□□ 9.7
YBX3P16989 PTP4A2-213ENST00000532001 911 ntTSL 511.68□□□□□ -0.548e-10■□□□□ 9.7
YBX3P16989 ERBB3-208ENST00000549205 971 ntTSL 514.76□□□□□ -0.051e-9■□□□□ 9.7
YBX3P16989 CCT8-210ENST00000496121 1326 ntTSL 29.82□□□□□ -0.843e-20■□□□□ 9.7
YBX3P16989 CCT8-203ENST00000432178 556 ntTSL 26.99□□□□□ -1.293e-20■□□□□ 9.7
YBX3P16989 KXD1-213ENST00000600372 656 ntTSL 325.39■■□□□ 1.661e-6■□□□□ 9.7
YBX3P16989 KXD1-212ENST00000600099 517 ntTSL 216.76■□□□□ 0.271e-6■□□□□ 9.7
YBX3P16989 KXD1-205ENST00000595870 686 ntTSL 1 (best)15.21■□□□□ 0.031e-6■□□□□ 9.7
YBX3P16989 KXD1-208ENST00000597438 635 ntTSL 313.98□□□□□ -0.171e-6■□□□□ 9.7
YBX3P16989 SNHG5-207ENST00000431043 998 ntTSL 216.97■□□□□ 0.316e-13■□□□□ 9.7
YBX3P16989 PIGT-219ENST00000638489 957 ntTSL 1 (best)21.59■■□□□ 1.054e-9■□□□□ 9.7
YBX3P16989 PIGT-239ENST00000639235 961 ntTSL 1 (best)18.39■□□□□ 0.534e-9■□□□□ 9.7
YBX3P16989 PIGT-245ENST00000639417 880 ntTSL 318.38■□□□□ 0.534e-9■□□□□ 9.7
YBX3P16989 PIGT-242ENST00000639286 861 ntTSL 517.6■□□□□ 0.414e-9■□□□□ 9.7
YBX3P16989 PIGT-213ENST00000638353 970 ntTSL 1 (best)17.01■□□□□ 0.314e-9■□□□□ 9.7
YBX3P16989 PIGT-218ENST00000638478 1076 ntTSL 313.08□□□□□ -0.324e-9■□□□□ 9.7
YBX3P16989 NOP53-211ENST00000600266 666 ntTSL 223.26■■□□□ 1.315e-12■□□□□ 9.7
YBX3P16989 TMEM63B-210ENST00000534326 1934 ntTSL 214.46□□□□□ -0.099e-10■□□□□ 9.7
YBX3P16989 TMEM63B-204ENST00000497371 616 ntTSL 514.07□□□□□ -0.169e-10■□□□□ 9.7
YBX3P16989 EIF4A1-209ENST00000578495 916 ntTSL 513.86□□□□□ -0.193e-10■□□□□ 9.7
YBX3P16989 EIF4A1-233ENST00000584784 818 ntTSL 511.56□□□□□ -0.563e-10■□□□□ 9.7
YBX3P16989 EIF4A1-211ENST00000578754 547 ntTSL 47.04□□□□□ -1.283e-10■□□□□ 9.7
YBX3P16989 LYL1-203ENST00000590974 902 ntTSL 329.2■■■□□ 2.263e-8■□□□□ 9.7
YBX3P16989 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.752e-7■□□□□ 9.7
YBX3P16989 TM4SF1-204ENST00000493348 976 ntTSL 210.22□□□□□ -0.772e-7■□□□□ 9.7
YBX3P16989 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.28□□□□□ -1.562e-7■□□□□ 9.7
YBX3P16989 CHP1-205ENST00000560411 1088 ntTSL 1 (best)18.96■□□□□ 0.634e-8■□□□□ 9.7
YBX3P16989 CHP1-202ENST00000392151 1000 ntTSL 216.17■□□□□ 0.184e-8■□□□□ 9.7
YBX3P16989 CHP1-203ENST00000558351 766 ntTSL 514.95□□□□□ -0.024e-8■□□□□ 9.7
YBX3P16989 TARS-204ENST00000502553 2534 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.748e-10■□□□□ 9.7
YBX3P16989 TARS-212ENST00000509731 2170 ntTSL 1 (best)10.39□□□□□ -0.758e-10■□□□□ 9.7
YBX3P16989 TARS-210ENST00000508361 2481 ntTSL 29.96□□□□□ -0.818e-10■□□□□ 9.7
YBX3P16989 TARS-202ENST00000455217 2523 ntTSL 2 BASIC9.73□□□□□ -0.858e-10■□□□□ 9.7
YBX3P16989 TARS-209ENST00000507716 2475 ntTSL 28.95□□□□□ -0.988e-10■□□□□ 9.7
YBX3P16989 TARS-201ENST00000265112 4314 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -18e-10■□□□□ 9.7
YBX3P16989 NELFE-207ENST00000454913 914 ntTSL 522.61■■□□□ 1.214e-7■□□□□ 9.7
YBX3P16989 LDHA-213ENST00000535451 465 ntTSL 417.23■□□□□ 0.352e-29■□□□□ 9.7
YBX3P16989 LDHA-211ENST00000494573 1154 ntTSL 211.91□□□□□ -0.52e-29■□□□□ 9.7
YBX3P16989 MAP3K4-213ENST00000542952 629 ntTSL 421.16■□□□□ 0.981e-8■□□□□ 9.7
YBX3P16989 MAP3K4-206ENST00000448119 225 ntTSL 35.54□□□□□ -1.521e-8■□□□□ 9.7
YBX3P16989 MAP3K4-205ENST00000446500 326 ntTSL 35.14□□□□□ -1.591e-8■□□□□ 9.7
YBX3P16989 SSNA1-203ENST00000463511 570 ntTSL 232.11■■■□□ 2.733e-6■□□□□ 9.7
YBX3P16989 SSNA1-202ENST00000459860 1170 ntTSL 1 (best)28.61■■■□□ 2.173e-6■□□□□ 9.7
YBX3P16989 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.053e-6■□□□□ 9.7
YBX3P16989 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.31■■□□□ 13e-6■□□□□ 9.7
YBX3P16989 STAT5A-202ENST00000444283 515 ntTSL 431.89■■■□□ 2.71e-6■□□□□ 9.7
Retrieved 100 of 29,075 protein–RNA pairs in 229.3 ms