RNA–Protein interactions for RNA: ENST00000351288.10

SMPD4-201, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2 BASIC

Gene SMPD4, Length 3,661 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-201ENST00000351288 NISCHQ9Y2I1 1504 aa20.98■□□□□ 0.95
SMPD4-201ENST00000351288 DCAF8L2P0C7V8 631 aa19.05■□□□□ 0.64
SMPD4-201ENST00000351288 SHROOM4Q9ULL8 1493 aa18.68■□□□□ 0.58
SMPD4-201ENST00000351288 SUPT5HO00267 1087 aaKnown RBP18.38■□□□□ 0.53
SMPD4-201ENST00000351288 ZCCHC6Q5VYS8 1495 aaKnown RBP17.67■□□□□ 0.42
SMPD4-201ENST00000351288 CCDC180Q9P1Z9 1646 aa17.53■□□□□ 0.4
SMPD4-201ENST00000351288 EHMT2Q96KQ7 1210 aa17.48■□□□□ 0.39
SMPD4-201ENST00000351288 CHIC1Q5VXU3 224 aa17.39■□□□□ 0.37
SMPD4-201ENST00000351288 ABCC9O60706 1549 aa17.32■□□□□ 0.36
SMPD4-201ENST00000351288 MYO15BQ96JP2 1530 aa17.32■□□□□ 0.36
SMPD4-201ENST00000351288 FAM9AQ8IZU1 332 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-201ENST00000351288 LOC105371045A0A1W2PR82 267 aa17.16■□□□□ 0.34
SMPD4-201ENST00000351288 PCGF6Q9BYE7 350 aa17.1■□□□□ 0.33
SMPD4-201ENST00000351288 SCRIBQ14160 1630 aa16.95■□□□□ 0.3
SMPD4-201ENST00000351288 PABPN1Q86U42 306 aaKnown RBP eCLIP16.91■□□□□ 0.32e-6■■□□□ 12.8
SMPD4-201ENST00000351288 TRIM41Q8WV44 630 aa16.88■□□□□ 0.29
SMPD4-201ENST00000351288 DCAF1Q9Y4B6 1507 aa16.88■□□□□ 0.29
SMPD4-201ENST00000351288 PPARGC1BQ86YN6 1023 aaKnown RBP16.84■□□□□ 0.29
SMPD4-201ENST00000351288 HRCP23327 699 aa16.79■□□□□ 0.28
SMPD4-201ENST00000351288 TTBK1Q5TCY1 1321 aaPredicted RBP16.76■□□□□ 0.27
SMPD4-201ENST00000351288 RSF1Q96T23 1441 aaPredicted RBP16.73■□□□□ 0.27
SMPD4-201ENST00000351288 CECR2Q9BXF3 1484 aa16.63■□□□□ 0.25
SMPD4-201ENST00000351288 RANGAP1P46060 587 aaPredicted RBP16.63■□□□□ 0.25
SMPD4-201ENST00000351288 RB1CC1Q8TDY2 1594 aa16.6■□□□□ 0.25
SMPD4-201ENST00000351288 MROH2BQ7Z745 1585 aa16.46■□□□□ 0.23
SMPD4-201ENST00000351288 TRIM26Q12899 539 aaPredicted RBP16.46■□□□□ 0.23
SMPD4-201ENST00000351288 WIZO95785 1651 aa16.38■□□□□ 0.21
SMPD4-201ENST00000351288 UBTFP17480 764 aaKnown RBP16.38■□□□□ 0.21
SMPD4-201ENST00000351288 NACADO15069 1562 aa16.34■□□□□ 0.21
SMPD4-201ENST00000351288 ABCC8Q09428 1581 aa16.15■□□□□ 0.18
SMPD4-201ENST00000351288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.13■□□□□ 0.17
SMPD4-201ENST00000351288 APLP2Q06481 763 aa16.07■□□□□ 0.16
SMPD4-201ENST00000351288 BAZ1AQ9NRL2 1556 aaPredicted RBP16.06■□□□□ 0.16
SMPD4-201ENST00000351288 CCDC88BA6NC98 1476 aa16.06■□□□□ 0.16
SMPD4-201ENST00000351288 ATP1B4Q9UN42 357 aaPredicted RBP16.03■□□□□ 0.16
SMPD4-201ENST00000351288 SOGA1O94964 1423 aa16.01■□□□□ 0.15
SMPD4-201ENST00000351288 CCER1Q8TC90 406 aaPredicted RBP15.99■□□□□ 0.15
SMPD4-201ENST00000351288 RUSC2Q8N2Y8 1516 aa15.97■□□□□ 0.15
SMPD4-201ENST00000351288 SMARCA4P51532 1647 aa15.96■□□□□ 0.15
SMPD4-201ENST00000351288 UNC13AQ9UPW8 1703 aa15.96■□□□□ 0.15
SMPD4-201ENST00000351288 ZEB1P37275 1124 aaPredicted RBP15.92■□□□□ 0.14
SMPD4-201ENST00000351288 TOP2AP11388 1531 aaKnown RBP15.91■□□□□ 0.14
SMPD4-201ENST00000351288 SMARCA2P51531 1590 aa15.9■□□□□ 0.14
SMPD4-201ENST00000351288 CSRNP3Q8WYN3 585 aa15.9■□□□□ 0.14
SMPD4-201ENST00000351288 HNRNPUL2Q1KMD3 747 aaKnown RBP15.89■□□□□ 0.13
SMPD4-201ENST00000351288 EIF4G1Q04637 1599 aaKnown RBP15.85■□□□□ 0.13
SMPD4-201ENST00000351288 ITGAEP38570 1179 aa15.83■□□□□ 0.13
SMPD4-201ENST00000351288 CEP162Q5TB80 1403 aa15.83■□□□□ 0.12
SMPD4-201ENST00000351288 BICRAQ9NZM4 1560 aa15.79■□□□□ 0.12
SMPD4-201ENST00000351288 WRNQ14191 1432 aaPredicted RBP eCLIP15.74■□□□□ 0.115e-6■■■■■ 34.5
SMPD4-201ENST00000351288 BAZ1BQ9UIG0 1483 aaKnown RBP15.72■□□□□ 0.11
SMPD4-201ENST00000351288 P3H3Q8IVL6 736 aa15.71■□□□□ 0.11
SMPD4-201ENST00000351288 TNIKQ9UKE5 1360 aa15.67■□□□□ 0.1
SMPD4-201ENST00000351288 ATAD2BQ9ULI0 1458 aa15.64■□□□□ 0.09
SMPD4-201ENST00000351288 SYNJ1O43426 1573 aa15.63■□□□□ 0.09
SMPD4-201ENST00000351288 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
SMPD4-201ENST00000351288 GOLGA3Q08378 1498 aa15.59■□□□□ 0.09
SMPD4-201ENST00000351288 DIEXFQ68CQ4 756 aaKnown RBP15.58■□□□□ 0.08
SMPD4-201ENST00000351288 RAPGEF2Q9Y4G8 1499 aa15.55■□□□□ 0.08
SMPD4-201ENST00000351288 CLIP1P30622 1438 aa15.55■□□□□ 0.08
SMPD4-201ENST00000351288 ARID3CA6NKF2 412 aa15.55■□□□□ 0.08
SMPD4-201ENST00000351288 YTHDC1Q96MU7 727 aaKnown RBP15.54■□□□□ 0.08
SMPD4-201ENST00000351288 EEA1Q15075 1411 aa15.51■□□□□ 0.07
SMPD4-201ENST00000351288 NEUROD1Q13562 356 aa15.48■□□□□ 0.07
SMPD4-201ENST00000351288 CEP164Q9UPV0 1460 aa15.48■□□□□ 0.07
SMPD4-201ENST00000351288 FAM50AQ14320 339 aaKnown RBP15.44■□□□□ 0.06
SMPD4-201ENST00000351288 FBLN2P98095 1184 aa15.43■□□□□ 0.06
SMPD4-201ENST00000351288 KANK4Q5T7N3 995 aaPredicted RBP15.42■□□□□ 0.06
SMPD4-201ENST00000351288 PEG3Q9GZU2 1588 aa15.42■□□□□ 0.06
SMPD4-201ENST00000351288 ZNF316A6NFI3 1004 aaPredicted RBP15.37■□□□□ 0.05
SMPD4-201ENST00000351288 VPS8Q8N3P4 1428 aa15.37■□□□□ 0.05
SMPD4-201ENST00000351288 ACIN1Q9UKV3 1341 aaKnown RBP15.35■□□□□ 0.05
SMPD4-201ENST00000351288 DNAJC5BQ9UF47 199 aa15.35■□□□□ 0.05
SMPD4-201ENST00000351288 GTF3C3Q9Y5Q9 886 aa15.34■□□□□ 0.05
SMPD4-201ENST00000351288 KIF21BO75037 1637 aa15.31■□□□□ 0.04
SMPD4-201ENST00000351288 MIER1Q8N108 512 aa15.31■□□□□ 0.04
SMPD4-201ENST00000351288 CUX1P39880 1505 aa15.28■□□□□ 0.04
SMPD4-201ENST00000351288 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
SMPD4-201ENST00000351288 CUX2O14529 1486 aa15.25■□□□□ 0.03
SMPD4-201ENST00000351288 KIF27Q86VH2 1401 aa15.24■□□□□ 0.03
SMPD4-201ENST00000351288 CENPBP07199 599 aaPredicted RBP15.24■□□□□ 0.03
SMPD4-201ENST00000351288 ARAP1Q96P48 1450 aa15.23■□□□□ 0.03
SMPD4-201ENST00000351288 NCAPD3P42695 1498 aa15.22■□□□□ 0.03
SMPD4-201ENST00000351288 PRXQ9BXM0 1461 aa15.19■□□□□ 0.02
SMPD4-201ENST00000351288 CADPSQ9ULU8 1353 aa15.18■□□□□ 0.02
SMPD4-201ENST00000351288 TDRD9Q8NDG6 1382 aaKnown RBP15.18■□□□□ 0.02
SMPD4-201ENST00000351288 CFTRP13569 1480 aa15.14■□□□□ 0.01
SMPD4-201ENST00000351288 CNGB1Q14028 1251 aaPredicted RBP15.14■□□□□ 0.01
SMPD4-201ENST00000351288 CARMIL1Q5VZK9 1371 aa15.14■□□□□ 0.01
SMPD4-201ENST00000351288 BIVM-ERCC5R4GMW8 1640 aa15.13■□□□□ 0.01
SMPD4-201ENST00000351288 NESP48681 1621 aa15.12■□□□□ 0.01
SMPD4-201ENST00000351288 IGF1RP08069 1367 aa15.11■□□□□ 0.01
SMPD4-201ENST00000351288 HMGXB3Q12766 1538 aa15.1■□□□□ 0.01
SMPD4-201ENST00000351288 ARHGAP35Q9NRY4 1499 aa15.1■□□□□ 0.01
SMPD4-201ENST00000351288 CHIC2Q9UKJ5 165 aa15.1■□□□□ 0.01
SMPD4-201ENST00000351288 DHX57Q6P158 1386 aaKnown RBP15.1■□□□□ 0.01
SMPD4-201ENST00000351288 TRIM52Q96A61 297 aa15.08■□□□□ 0.01
SMPD4-201ENST00000351288 HIRIP3Q9BW71 556 aaPredicted RBP15.08■□□□□ 0
SMPD4-201ENST00000351288 FGD5Q6ZNL6 1462 aa15.06■□□□□ 0
SMPD4-201ENST00000351288 RAD54L2Q9Y4B4 1467 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms