RNA–Protein interactions for RNA: ENST00000532001.6

PTP4A2-213, Transcript of protein tyrosine phosphatase type IVA, member 2, humanhuman

TSL 5

Gene PTP4A2, Length 911 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A2-213ENST00000532001 AEBP2Q6ZN18 517 aaPredicted RBP27.24■■□□□ 1.95
PTP4A2-213ENST00000532001 CHIC1Q5VXU3 224 aa26.21■■□□□ 1.79
PTP4A2-213ENST00000532001 SENP3Q9H4L4 574 aaPredicted RBP23.2■■□□□ 1.3
PTP4A2-213ENST00000532001 PHF23Q9BUL5 403 aaPredicted RBP22.99■■□□□ 1.27
PTP4A2-213ENST00000532001 NISCHQ9Y2I1 1504 aa21.64■■□□□ 1.05
PTP4A2-213ENST00000532001 FOXD1Q16676 465 aa21.56■■□□□ 1.04
PTP4A2-213ENST00000532001 PLPPR3Q6T4P5 718 aa21.1■□□□□ 0.97
PTP4A2-213ENST00000532001 PPP6R1Q9UPN7 881 aa20.41■□□□□ 0.86
PTP4A2-213ENST00000532001 ADRA2BP18089 450 aa20.35■□□□□ 0.85
PTP4A2-213ENST00000532001 PIAS4Q8N2W9 510 aaPredicted RBP20.22■□□□□ 0.83
PTP4A2-213ENST00000532001 MSH5O43196 834 aa20.07■□□□□ 0.8
PTP4A2-213ENST00000532001 POTEDQ86YR6 584 aa19.83■□□□□ 0.77
PTP4A2-213ENST00000532001 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
PTP4A2-213ENST00000532001 ABCC9O60706 1549 aa19.21■□□□□ 0.67
PTP4A2-213ENST00000532001 SCAF1Q9H7N4 1312 aaKnown RBP18.65■□□□□ 0.58
PTP4A2-213ENST00000532001 MAPK8IP2Q13387 824 aaPredicted RBP18.58■□□□□ 0.56
PTP4A2-213ENST00000532001 PPP4R3CPQ6ZMV5 832 aa18.51■□□□□ 0.55
PTP4A2-213ENST00000532001 DMRT2Q9Y5R5 561 aa18.46■□□□□ 0.55
PTP4A2-213ENST00000532001 RB1CC1Q8TDY2 1594 aa18.42■□□□□ 0.54
PTP4A2-213ENST00000532001 NACADO15069 1562 aa18.34■□□□□ 0.53
PTP4A2-213ENST00000532001 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
PTP4A2-213ENST00000532001 CNKSR2Q8WXI2 1034 aa18.1■□□□□ 0.49
PTP4A2-213ENST00000532001 UNC13AQ9UPW8 1703 aa18.03■□□□□ 0.48
PTP4A2-213ENST00000532001 DCAF8L2P0C7V8 631 aa17.99■□□□□ 0.47
PTP4A2-213ENST00000532001 ZCCHC6Q5VYS8 1495 aaKnown RBP17.97■□□□□ 0.47
PTP4A2-213ENST00000532001 DCAF1Q9Y4B6 1507 aa17.95■□□□□ 0.46
PTP4A2-213ENST00000532001 HOXD11P31277 338 aaPredicted RBP17.92■□□□□ 0.46
PTP4A2-213ENST00000532001 NCBP3Q53F19 620 aaKnown RBP17.91■□□□□ 0.46
PTP4A2-213ENST00000532001 DNAJC5BQ9UF47 199 aa17.9■□□□□ 0.46
PTP4A2-213ENST00000532001 BICRAQ9NZM4 1560 aa17.89■□□□□ 0.45
PTP4A2-213ENST00000532001 RNF216Q9NWF9 866 aaPredicted RBP17.87■□□□□ 0.45
PTP4A2-213ENST00000532001 PABPN1Q86U42 306 aaKnown RBP eCLIP17.82■□□□□ 0.44
PTP4A2-213ENST00000532001 SHROOM4Q9ULL8 1493 aa17.75■□□□□ 0.43
PTP4A2-213ENST00000532001 NPM3O75607 178 aaKnown RBP17.66■□□□□ 0.42
PTP4A2-213ENST00000532001 SCRIBQ14160 1630 aa17.62■□□□□ 0.41
PTP4A2-213ENST00000532001 DCAF8L1A6NGE4 600 aa17.6■□□□□ 0.41
PTP4A2-213ENST00000532001 KCNA4P22459 653 aa17.6■□□□□ 0.41
PTP4A2-213ENST00000532001 EIF4G1Q04637 1599 aaKnown RBP17.43■□□□□ 0.38
PTP4A2-213ENST00000532001 CC2D2AQ9P2K1 1620 aa17.43■□□□□ 0.38
PTP4A2-213ENST00000532001 CECR2Q9BXF3 1484 aa17.34■□□□□ 0.37
PTP4A2-213ENST00000532001 RNF39Q9H2S5 420 aa17.16■□□□□ 0.34
PTP4A2-213ENST00000532001 CACNB1Q02641 598 aaPredicted RBP17.1■□□□□ 0.33
PTP4A2-213ENST00000532001 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.02■□□□□ 0.32
PTP4A2-213ENST00000532001 C1QBPQ07021 282 aaKnown RBP16.93■□□□□ 0.3
PTP4A2-213ENST00000532001 NCAPD3P42695 1498 aa16.9■□□□□ 0.3
PTP4A2-213ENST00000532001 SMARCA4P51532 1647 aa16.88■□□□□ 0.29
PTP4A2-213ENST00000532001 ATAD2BQ9ULI0 1458 aa16.84■□□□□ 0.29
PTP4A2-213ENST00000532001 SMARCA2P51531 1590 aa16.84■□□□□ 0.29
PTP4A2-213ENST00000532001 HMGXB3Q12766 1538 aa16.83■□□□□ 0.28
PTP4A2-213ENST00000532001 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
PTP4A2-213ENST00000532001 SLC4A2P04920 1241 aa16.78■□□□□ 0.28
PTP4A2-213ENST00000532001 PEG3Q9GZU2 1588 aa16.77■□□□□ 0.27
PTP4A2-213ENST00000532001 U3KPZ7 1027 aaPredicted RBP16.74■□□□□ 0.27
PTP4A2-213ENST00000532001 SLC4A1APQ9BWU0 796 aaKnown RBP16.68■□□□□ 0.26
PTP4A2-213ENST00000532001 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
PTP4A2-213ENST00000532001 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.25
PTP4A2-213ENST00000532001 CUX2O14529 1486 aa16.62■□□□□ 0.25
PTP4A2-213ENST00000532001 ERCC6Q03468 1493 aa16.6■□□□□ 0.25
PTP4A2-213ENST00000532001 NESP48681 1621 aa16.54■□□□□ 0.24
PTP4A2-213ENST00000532001 LAMC3Q9Y6N6 1575 aa16.53■□□□□ 0.24
PTP4A2-213ENST00000532001 THOC2Q8NI27 1593 aaKnown RBP16.46■□□□□ 0.23
PTP4A2-213ENST00000532001 WIZO95785 1651 aa16.44■□□□□ 0.22
PTP4A2-213ENST00000532001 DNAJC5Q9H3Z4 198 aa16.43■□□□□ 0.22
PTP4A2-213ENST00000532001 KIF21AQ7Z4S6 1674 aa16.4■□□□□ 0.22
PTP4A2-213ENST00000532001 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.39■□□□□ 0.21
PTP4A2-213ENST00000532001 HNRNPUL2Q1KMD3 747 aaKnown RBP16.39■□□□□ 0.21
PTP4A2-213ENST00000532001 PDS5BQ9NTI5 1447 aa16.38■□□□□ 0.21
PTP4A2-213ENST00000532001 SPINK5Q9NQ38 1064 aaPredicted RBP16.37■□□□□ 0.21
PTP4A2-213ENST00000532001 CADPSQ9ULU8 1353 aa16.36■□□□□ 0.21
PTP4A2-213ENST00000532001 FOXD4L1Q9NU39 408 aa16.35■□□□□ 0.21
PTP4A2-213ENST00000532001 MYCNP04198 464 aaPredicted RBP16.33■□□□□ 0.2
PTP4A2-213ENST00000532001 RSF1Q96T23 1441 aaPredicted RBP16.32■□□□□ 0.2
PTP4A2-213ENST00000532001 APLP2Q06481 763 aa16.31■□□□□ 0.2
PTP4A2-213ENST00000532001 SAMD1Q6SPF0 538 aaPredicted RBP16.31■□□□□ 0.2
PTP4A2-213ENST00000532001 CAPN15O75808 1086 aa16.3■□□□□ 0.2
PTP4A2-213ENST00000532001 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
PTP4A2-213ENST00000532001 MRC2Q9UBG0 1479 aa16.25■□□□□ 0.19
PTP4A2-213ENST00000532001 WDR62O43379 1518 aa16.24■□□□□ 0.19
PTP4A2-213ENST00000532001 ZBTB22O15209 634 aa16.22■□□□□ 0.19
PTP4A2-213ENST00000532001 CFTRP13569 1480 aa16.22■□□□□ 0.19
PTP4A2-213ENST00000532001 CEP164Q9UPV0 1460 aa16.2■□□□□ 0.18
PTP4A2-213ENST00000532001 DSG3P32926 999 aa16.17■□□□□ 0.18
PTP4A2-213ENST00000532001 FANCD2Q9BXW9 1451 aa16.16■□□□□ 0.18
PTP4A2-213ENST00000532001 PRDM2Q13029 1718 aa16.16■□□□□ 0.18
PTP4A2-213ENST00000532001 ZNF219Q9P2Y4 722 aaPredicted RBP16.15■□□□□ 0.18
PTP4A2-213ENST00000532001 TRHP20396 242 aaPredicted RBP16.12■□□□□ 0.17
PTP4A2-213ENST00000532001 CCDC88BA6NC98 1476 aa16.04■□□□□ 0.16
PTP4A2-213ENST00000532001 URB2Q14146 1524 aaKnown RBP16.04■□□□□ 0.16
PTP4A2-213ENST00000532001 ABCB7O75027 752 aa15.95■□□□□ 0.14
PTP4A2-213ENST00000532001 ATF5Q9Y2D1 282 aaPredicted RBP15.91■□□□□ 0.14
PTP4A2-213ENST00000532001 ABCC8Q09428 1581 aa15.89■□□□□ 0.13
PTP4A2-213ENST00000532001 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
PTP4A2-213ENST00000532001 IFT140Q96RY7 1462 aa15.88■□□□□ 0.13
PTP4A2-213ENST00000532001 DNMBPQ6XZF7 1577 aa15.87■□□□□ 0.13
PTP4A2-213ENST00000532001 ATXN8OSP0DMR3 200 aa15.83■□□□□ 0.12
PTP4A2-213ENST00000532001 ZNF608Q9ULD9 1512 aaPredicted RBP15.8■□□□□ 0.12
PTP4A2-213ENST00000532001 POLA2Q14181 598 aa15.78■□□□□ 0.12
PTP4A2-213ENST00000532001 TARBP1Q13395 1621 aaKnown RBP15.78■□□□□ 0.12
PTP4A2-213ENST00000532001 EIF4G3O43432 1585 aaKnown RBP15.78■□□□□ 0.12
PTP4A2-213ENST00000532001 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms