RNA–Protein interactions for RNA: ENST00000494573.6

LDHA-211, Transcript of lactate dehydrogenase A, humanhuman

TSL 2

Gene LDHA, Length 1,154 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-211ENST00000494573 AEBP2Q6ZN18 517 aaPredicted RBP24.87■■□□□ 1.57
LDHA-211ENST00000494573 NISCHQ9Y2I1 1504 aa24.44■■□□□ 1.5
LDHA-211ENST00000494573 CHIC1Q5VXU3 224 aa23.72■■□□□ 1.39
LDHA-211ENST00000494573 CCDC180Q9P1Z9 1646 aa21.24■□□□□ 0.99
LDHA-211ENST00000494573 SENP3Q9H4L4 574 aaPredicted RBP21.23■□□□□ 0.99
LDHA-211ENST00000494573 PHF23Q9BUL5 403 aaPredicted RBP20.93■□□□□ 0.94
LDHA-211ENST00000494573 ZCCHC6Q5VYS8 1495 aaKnown RBP20.63■□□□□ 0.89
LDHA-211ENST00000494573 DCAF1Q9Y4B6 1507 aa20.27■□□□□ 0.83
LDHA-211ENST00000494573 SHROOM4Q9ULL8 1493 aa20.12■□□□□ 0.81
LDHA-211ENST00000494573 MYO15BQ96JP2 1530 aa19.85■□□□□ 0.77
LDHA-211ENST00000494573 DCAF8L2P0C7V8 631 aa19.82■□□□□ 0.76
LDHA-211ENST00000494573 FOXD1Q16676 465 aa19.75■□□□□ 0.75
LDHA-211ENST00000494573 NACADO15069 1562 aa19.57■□□□□ 0.72
LDHA-211ENST00000494573 SUPT5HO00267 1087 aaKnown RBP19.56■□□□□ 0.72
LDHA-211ENST00000494573 SCRIBQ14160 1630 aa19.47■□□□□ 0.71
LDHA-211ENST00000494573 ABCC9O60706 1549 aa19.46■□□□□ 0.71
LDHA-211ENST00000494573 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
LDHA-211ENST00000494573 RSF1Q96T23 1441 aaPredicted RBP19.08■□□□□ 0.65
LDHA-211ENST00000494573 UNC13AQ9UPW8 1703 aa19.07■□□□□ 0.64
LDHA-211ENST00000494573 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
LDHA-211ENST00000494573 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
LDHA-211ENST00000494573 MROH2BQ7Z745 1585 aa18.88■□□□□ 0.61
LDHA-211ENST00000494573 BAZ1AQ9NRL2 1556 aaPredicted RBP18.85■□□□□ 0.61
LDHA-211ENST00000494573 WIZO95785 1651 aa18.81■□□□□ 0.6
LDHA-211ENST00000494573 SMARCA4P51532 1647 aa18.74■□□□□ 0.59
LDHA-211ENST00000494573 BICRAQ9NZM4 1560 aa18.71■□□□□ 0.59
LDHA-211ENST00000494573 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
LDHA-211ENST00000494573 EIF4G1Q04637 1599 aaKnown RBP18.56■□□□□ 0.56
LDHA-211ENST00000494573 PPP6R1Q9UPN7 881 aa18.52■□□□□ 0.56
LDHA-211ENST00000494573 PIAS4Q8N2W9 510 aaPredicted RBP18.5■□□□□ 0.55
LDHA-211ENST00000494573 PEG3Q9GZU2 1588 aa18.5■□□□□ 0.55
LDHA-211ENST00000494573 ADRA2BP18089 450 aa18.48■□□□□ 0.55
LDHA-211ENST00000494573 MSH5O43196 834 aa18.47■□□□□ 0.55
LDHA-211ENST00000494573 SMARCA2P51531 1590 aa18.47■□□□□ 0.55
LDHA-211ENST00000494573 TRIM41Q8WV44 630 aa18.39■□□□□ 0.53
LDHA-211ENST00000494573 CCDC88BA6NC98 1476 aa18.37■□□□□ 0.53
LDHA-211ENST00000494573 PABPN1Q86U42 306 aaKnown RBP eCLIP18.36■□□□□ 0.53
LDHA-211ENST00000494573 LOC105371045A0A1W2PR82 267 aa18.26■□□□□ 0.51
LDHA-211ENST00000494573 ATAD2BQ9ULI0 1458 aa18.23■□□□□ 0.51
LDHA-211ENST00000494573 BAZ1BQ9UIG0 1483 aaKnown RBP18.16■□□□□ 0.5
LDHA-211ENST00000494573 ABCC8Q09428 1581 aa18.15■□□□□ 0.5
LDHA-211ENST00000494573 HMGXB3Q12766 1538 aa18.09■□□□□ 0.49
LDHA-211ENST00000494573 FAM9AQ8IZU1 332 aaPredicted RBP18.03■□□□□ 0.48
LDHA-211ENST00000494573 EEA1Q15075 1411 aa18■□□□□ 0.47
LDHA-211ENST00000494573 NCAPD3P42695 1498 aa18■□□□□ 0.47
LDHA-211ENST00000494573 WRNQ14191 1432 aaPredicted RBP eCLIP17.95■□□□□ 0.46
LDHA-211ENST00000494573 SYNJ1O43426 1573 aa17.93■□□□□ 0.46
LDHA-211ENST00000494573 PRDM2Q13029 1718 aa17.92■□□□□ 0.46
LDHA-211ENST00000494573 PCGF6Q9BYE7 350 aa17.92■□□□□ 0.46
LDHA-211ENST00000494573 BIVM-ERCC5R4GMW8 1640 aa17.87■□□□□ 0.45
LDHA-211ENST00000494573 HRCP23327 699 aa17.87■□□□□ 0.45
LDHA-211ENST00000494573 TRIM26Q12899 539 aaPredicted RBP17.87■□□□□ 0.45
LDHA-211ENST00000494573 TOP2BQ02880 1626 aa17.85■□□□□ 0.45
LDHA-211ENST00000494573 SOGA1O94964 1423 aa17.84■□□□□ 0.45
LDHA-211ENST00000494573 POTEDQ86YR6 584 aa17.83■□□□□ 0.44
LDHA-211ENST00000494573 KIF21BO75037 1637 aa17.8■□□□□ 0.44
LDHA-211ENST00000494573 RUSC2Q8N2Y8 1516 aa17.77■□□□□ 0.44
LDHA-211ENST00000494573 TNIKQ9UKE5 1360 aa17.77■□□□□ 0.43
LDHA-211ENST00000494573 GOLGA3Q08378 1498 aa17.76■□□□□ 0.43
LDHA-211ENST00000494573 CSRNP3Q8WYN3 585 aa17.75■□□□□ 0.43
LDHA-211ENST00000494573 CFTRP13569 1480 aa17.73■□□□□ 0.43
LDHA-211ENST00000494573 CC2D2AQ9P2K1 1620 aa17.71■□□□□ 0.43
LDHA-211ENST00000494573 CEP164Q9UPV0 1460 aa17.7■□□□□ 0.42
LDHA-211ENST00000494573 EHMT2Q96KQ7 1210 aa17.7■□□□□ 0.42
LDHA-211ENST00000494573 CEP162Q5TB80 1403 aa17.69■□□□□ 0.42
LDHA-211ENST00000494573 CUX1P39880 1505 aa17.63■□□□□ 0.41
LDHA-211ENST00000494573 ERICH3Q5RHP9 1530 aa17.57■□□□□ 0.4
LDHA-211ENST00000494573 CADPSQ9ULU8 1353 aa17.54■□□□□ 0.4
LDHA-211ENST00000494573 UBTFP17480 764 aaKnown RBP17.53■□□□□ 0.4
LDHA-211ENST00000494573 RAPGEF2Q9Y4G8 1499 aa17.5■□□□□ 0.39
LDHA-211ENST00000494573 PRXQ9BXM0 1461 aa17.48■□□□□ 0.39
LDHA-211ENST00000494573 KIF27Q86VH2 1401 aa17.46■□□□□ 0.39
LDHA-211ENST00000494573 ZEB1P37275 1124 aaPredicted RBP17.45■□□□□ 0.38
LDHA-211ENST00000494573 CLIP1P30622 1438 aa17.45■□□□□ 0.38
LDHA-211ENST00000494573 LAMC3Q9Y6N6 1575 aa17.39■□□□□ 0.37
LDHA-211ENST00000494573 VPS8Q8N3P4 1428 aa17.38■□□□□ 0.37
LDHA-211ENST00000494573 DNMBPQ6XZF7 1577 aa17.38■□□□□ 0.37
LDHA-211ENST00000494573 FANCD2Q9BXW9 1451 aa17.37■□□□□ 0.37
LDHA-211ENST00000494573 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
LDHA-211ENST00000494573 PPARGC1BQ86YN6 1023 aaKnown RBP17.33■□□□□ 0.36
LDHA-211ENST00000494573 CUX2O14529 1486 aa17.31■□□□□ 0.36
LDHA-211ENST00000494573 WDR97A6NE52 1622 aa17.27■□□□□ 0.36
LDHA-211ENST00000494573 TOPBP1Q92547 1522 aa17.26■□□□□ 0.35
LDHA-211ENST00000494573 ARAP1Q96P48 1450 aa17.26■□□□□ 0.35
LDHA-211ENST00000494573 NESP48681 1621 aa17.25■□□□□ 0.35
LDHA-211ENST00000494573 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
LDHA-211ENST00000494573 IGF1RP08069 1367 aa17.22■□□□□ 0.35
LDHA-211ENST00000494573 CUL7Q14999 1698 aa17.22■□□□□ 0.35
LDHA-211ENST00000494573 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
LDHA-211ENST00000494573 KIF21AQ7Z4S6 1674 aa17.19■□□□□ 0.34
LDHA-211ENST00000494573 CARMIL1Q5VZK9 1371 aa17.15■□□□□ 0.34
LDHA-211ENST00000494573 ARHGAP35Q9NRY4 1499 aa17.15■□□□□ 0.34
LDHA-211ENST00000494573 CTTNBP2Q8WZ74 1663 aa17.15■□□□□ 0.34
LDHA-211ENST00000494573 URB2Q14146 1524 aaKnown RBP17.15■□□□□ 0.34
LDHA-211ENST00000494573 PDS5BQ9NTI5 1447 aa17.14■□□□□ 0.33
LDHA-211ENST00000494573 APLP2Q06481 763 aa17.14■□□□□ 0.33
LDHA-211ENST00000494573 ABCA5Q8WWZ7 1642 aa17.12■□□□□ 0.33
LDHA-211ENST00000494573 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
LDHA-211ENST00000494573 TTBK1Q5TCY1 1321 aaPredicted RBP17.09■□□□□ 0.33
LDHA-211ENST00000494573 MAP3K1Q13233 1512 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms