Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.125e-6■□□□□ 9.1
RPS3P23396 SLC13A3-203ENST00000372121 848 ntTSL 515.62■□□□□ 0.095e-6■□□□□ 9.1
RPS3P23396 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.095e-6■□□□□ 9.1
RPS3P23396 NDUFV1-204ENST00000524876 584 ntTSL 415.48■□□□□ 0.078e-13■□□□□ 9.1
RPS3P23396 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.045e-6■□□□□ 9.1
RPS3P23396 RPLP2-208ENST00000532004 353 ntTSL 315.03■□□□□ -05e-9■□□□□ 9.1
RPS3P23396 TTC38-203ENST00000421359 821 ntTSL 415.02■□□□□ -05e-6■□□□□ 9.1
RPS3P23396 NOL7-201ENST00000420088 646 ntTSL 214.72□□□□□ -0.051e-12■□□□□ 9.1
RPS3P23396 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.15e-6■□□□□ 9.1
RPS3P23396 SNRPN-209ENST00000579070 871 ntTSL 314.26□□□□□ -0.135e-6■□□□□ 9.1
RPS3P23396 SNRPN-210ENST00000584968 908 ntTSL 514.16□□□□□ -0.145e-6■□□□□ 9.1
RPS3P23396 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.155e-6■□□□□ 9.1
RPS3P23396 SNURF-203ENST00000580062 796 ntTSL 314.06□□□□□ -0.165e-6■□□□□ 9.1
RPS3P23396 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.84□□□□□ -0.195e-6■□□□□ 9.1
RPS3P23396 NDUFV1-212ENST00000528328 477 ntTSL 413.13□□□□□ -0.318e-13■□□□□ 9.1
RPS3P23396 TTC38-204ENST00000422713 828 ntTSL 512.7□□□□□ -0.385e-6■□□□□ 9.1
RPS3P23396 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.385e-6■□□□□ 9.1
RPS3P23396 MID1IP1-204ENST00000614558 3781 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.465e-6■□□□□ 9.1
RPS3P23396 SNRPB2-203ENST00000478522 540 ntTSL 212.11□□□□□ -0.475e-6■□□□□ 9.1
RPS3P23396 SLC38A3-202ENST00000417851 438 ntTSL 311.98□□□□□ -0.495e-6■□□□□ 9.1
RPS3P23396 CLDN12-213ENST00000496677 1098 ntTSL 1 (best)11.95□□□□□ -0.55e-6■□□□□ 9.1
RPS3P23396 RPLP2-206ENST00000530398 313 ntTSL 311.44□□□□□ -0.585e-9■□□□□ 9.1
RPS3P23396 RPLP2-205ENST00000527517 646 ntTSL 211.39□□□□□ -0.595e-9■□□□□ 9.1
RPS3P23396 NDUFV1-214ENST00000528548 579 ntTSL 410.96□□□□□ -0.658e-13■□□□□ 9.1
RPS3P23396 RPLP2-203ENST00000525722 489 ntTSL 210.84□□□□□ -0.675e-9■□□□□ 9.1
RPS3P23396 RPLP2-204ENST00000526222 350 ntTSL 210.84□□□□□ -0.675e-9■□□□□ 9.1
RPS3P23396 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.685e-6■□□□□ 9.1
RPS3P23396 GUCD1-210ENST00000490810 346 ntTSL 210.72□□□□□ -0.695e-6■□□□□ 9.1
RPS3P23396 PDCD11-201ENST00000369797 6453 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.695e-6■□□□□ 9.1
RPS3P23396 NDUFV1-206ENST00000526138 557 ntTSL 49.38□□□□□ -0.918e-13■□□□□ 9.1
RPS3P23396 CLDN12-204ENST00000416322 1163 ntTSL 59.37□□□□□ -0.915e-6■□□□□ 9.1
RPS3P23396 DCTN1-224ENST00000495895 503 ntTSL 29.3□□□□□ -0.925e-6■□□□□ 9.1
RPS3P23396 CLDN12-202ENST00000394604 846 ntTSL 59.03□□□□□ -0.965e-6■□□□□ 9.1
RPS3P23396 SNRPN-204ENST00000400098 525 ntTSL 48.71□□□□□ -1.025e-6■□□□□ 9.1
RPS3P23396 AC006153.1-201ENST00000480135 371 ntTSL 3 BASIC8.48□□□□□ -1.055e-6■□□□□ 9.1
RPS3P23396 NOL7-203ENST00000474485 920 ntTSL 37.92□□□□□ -1.141e-12■□□□□ 9.1
RPS3P23396 SNRPN-206ENST00000553597 849 ntTSL 37.85□□□□□ -1.155e-6■□□□□ 9.1
RPS3P23396 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.185e-6■□□□□ 9.1
RPS3P23396 ERBB3-218ENST00000551176 277 ntTSL 1 (best)7.39□□□□□ -1.235e-6■□□□□ 9.1
RPS3P23396 CLDN12-205ENST00000427904 618 ntTSL 37.38□□□□□ -1.235e-6■□□□□ 9.1
RPS3P23396 SNURF-202ENST00000577949 650 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.295e-6■□□□□ 9.1
RPS3P23396 AC124312.1-202ENST00000557230 669 ntAPPRIS ALT2 TSL 56.87□□□□□ -1.315e-6■□□□□ 9.1
RPS3P23396 CS-203ENST00000546585 1803 ntTSL 26.87□□□□□ -1.315e-6■□□□□ 9.1
RPS3P23396 RAB6A-205ENST00000537446 447 ntTSL 36.86□□□□□ -1.315e-6■□□□□ 9.1
RPS3P23396 RAB6A-210ENST00000545625 447 ntTSL 36.86□□□□□ -1.315e-6■□□□□ 9.1
RPS3P23396 RPS7-206ENST00000472966 556 ntTSL 1 (best)6.43□□□□□ -1.385e-6■□□□□ 9.1
RPS3P23396 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.28□□□□□ -1.45e-6■□□□□ 9.1
RPS3P23396 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.525e-6■□□□□ 9.1
RPS3P23396 SCARB2-217ENST00000639324 842 ntTSL 54.98□□□□□ -1.615e-6■□□□□ 9.1
RPS3P23396 CLDN12-214ENST00000498033 420 ntTSL 34.6□□□□□ -1.675e-6■□□□□ 9.1
RPS3P23396 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.36□□□□□ -1.715e-6■□□□□ 9.1
RPS3P23396 IL6ST-210ENST00000503773 3031 ntTSL 52.67□□□□□ -1.985e-6■□□□□ 9.1
RPS3P23396 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.41□□□□□ -2.025e-6■□□□□ 9.1
RPS3P23396 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.37□□□□□ -2.035e-6■□□□□ 9.1
RPS3P23396 FKBP4-207ENST00000544366 287 ntTSL 32.31□□□□□ -2.045e-6■□□□□ 9.1
RPS3P23396 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.15e-6■□□□□ 9.1
RPS3P23396 IL6ST-214ENST00000577363 282 ntTSL 51.5□□□□□ -2.175e-6■□□□□ 9.1
RPS3P23396 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1□□□□□ -2.255e-6■□□□□ 9.1
RPS3P23396 CLDN12-206ENST00000451941 527 ntTSL 30.18□□□□□ -2.385e-6■□□□□ 9.1
RPS3P23396 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.08□□□□□ -2.45e-6■□□□□ 9.1
RPS3P23396 TJP1-206ENST00000473741 270 ntTSL 2-0.14□□□□□ -2.435e-6■□□□□ 9.1
RPS3P23396 CLDN12-210ENST00000483862 338 ntTSL 2-0.24□□□□□ -2.455e-6■□□□□ 9.1
RPS3P23396 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.94□□□□□ -2.725e-6■□□□□ 9.1
RPS3P23396 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.583e-9■□□□□ 9.1
RPS3P23396 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.463e-9■□□□□ 9.1
RPS3P23396 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.97■□□□□ 0.313e-9■□□□□ 9.1
RPS3P23396 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.13e-9■□□□□ 9.1
RPS3P23396 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC11.92□□□□□ -0.53e-9■□□□□ 9.1
RPS3P23396 TMEM123-204ENST00000526676 467 ntTSL 414.71□□□□□ -0.051e-7■□□□□ 9.1
RPS3P23396 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.31e-7■□□□□ 9.1
RPS3P23396 TMEM123-207ENST00000531103 568 ntTSL 42.08□□□□□ -2.081e-7■□□□□ 9.1
RPS3P23396 TMEM123-205ENST00000528969 568 ntAPPRIS ALT2 TSL 40.63□□□□□ -2.311e-7■□□□□ 9.1
RPS3P23396 PIM1-203ENST00000479509 675 ntTSL 212.44□□□□□ -0.422e-23■□□□□ 9.1
RPS3P23396 PIM1-202ENST00000468243 818 ntTSL 1 (best)10.75□□□□□ -0.692e-23■□□□□ 9.1
RPS3P23396 ACTR2-203ENST00000471552 554 ntTSL 414.41□□□□□ -0.11e-6■□□□□ 9.1
RPS3P23396 ACTR2-204ENST00000476840 587 ntTSL 412.94□□□□□ -0.341e-6■□□□□ 9.1
RPS3P23396 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.2■□□□□ 0.341e-7■□□□□ 9.1
RPS3P23396 FKBP10-208ENST00000585664 598 ntTSL 312.61□□□□□ -0.394e-12■□□□□ 9.1
RPS3P23396 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.4■□□□□ 0.382e-6■□□□□ 9.1
RPS3P23396 NT5E-201ENST00000257770 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.472e-6■□□□□ 9.1
RPS3P23396 NT5E-203ENST00000369651 3918 ntTSL 2 BASIC11.19□□□□□ -0.622e-6■□□□□ 9.1
RPS3P23396 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.72■■□□□ 1.392e-8■□□□□ 9.1
RPS3P23396 UBE2D2-204ENST00000505007 1170 ntTSL 318.51■□□□□ 0.552e-8■□□□□ 9.1
RPS3P23396 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.392e-8■□□□□ 9.1
RPS3P23396 SSBP1-207ENST00000468267 800 ntTSL 216.56■□□□□ 0.242e-8■□□□□ 9.1
RPS3P23396 SSBP1-202ENST00000461433 1694 ntTSL 1 (best)11.1□□□□□ -0.632e-8■□□□□ 9.1
RPS3P23396 ZNF207-212ENST00000580759 572 ntTSL 510.26□□□□□ -0.772e-8■□□□□ 9.1
RPS3P23396 UBE2D2-208ENST00000511725 656 ntTSL 2 BASIC10.17□□□□□ -0.782e-8■□□□□ 9.1
RPS3P23396 ZNF207-210ENST00000579634 580 ntTSL 39.24□□□□□ -0.932e-8■□□□□ 9.1
RPS3P23396 ZNF207-214ENST00000582165 592 ntTSL 57.9□□□□□ -1.142e-8■□□□□ 9.1
RPS3P23396 WASF2-201ENST00000536657 1083 ntTSL 2 BASIC7.55□□□□□ -1.22e-8■□□□□ 9.1
RPS3P23396 UBE2D2-203ENST00000398734 901 ntTSL 56.99□□□□□ -1.292e-8■□□□□ 9.1
RPS3P23396 SSBP1-213ENST00000496622 2620 ntTSL 1 (best)5.9□□□□□ -1.472e-8■□□□□ 9.1
RPS3P23396 ZNF207-206ENST00000577324 1005 ntTSL 24.79□□□□□ -1.642e-8■□□□□ 9.1
RPS3P23396 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.94□□□□□ -1.782e-8■□□□□ 9.1
RPS3P23396 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.862e-8■□□□□ 9.1
RPS3P23396 ZNF207-205ENST00000394679 847 ntTSL 32.89□□□□□ -1.952e-8■□□□□ 9.1
RPS3P23396 AC005899.4-202ENST00000578389 429 ntTSL 22.36□□□□□ -2.032e-8■□□□□ 9.1
RPS3P23396 ZNF207-208ENST00000578918 580 ntTSL 42.33□□□□□ -2.042e-8■□□□□ 9.1
RPS3P23396 UBE2D2-207ENST00000511691 543 ntTSL 21.07□□□□□ -2.242e-8■□□□□ 9.1
Retrieved 100 of 24,271 protein–RNA pairs in 628.2 ms