Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.28■□□□□ 0.04
LDB2O43679 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDB2O43679 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDB2O43679 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LDB2O43679 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB2O43679 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB2O43679 AL137783.1-201ENST00000623494 1896 ntBASIC15.27■□□□□ 0.04
LDB2O43679 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB2O43679 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 CICP14-201ENST00000629111 2732 ntBASIC15.27■□□□□ 0.04
LDB2O43679 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB2O43679 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 AL139094.1-201ENST00000405549 1188 ntBASIC15.27■□□□□ 0.04
LDB2O43679 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 CRB3P1-201ENST00000449338 276 ntBASIC15.27■□□□□ 0.04
LDB2O43679 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.27■□□□□ 0.04
LDB2O43679 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.27■□□□□ 0.04
LDB2O43679 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.27■□□□□ 0.04
LDB2O43679 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.27■□□□□ 0.04
LDB2O43679 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDB2O43679 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LDB2O43679 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LDB2O43679 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.27■□□□□ 0.03
LDB2O43679 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
LDB2O43679 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.27■□□□□ 0.03
LDB2O43679 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
LDB2O43679 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.03
LDB2O43679 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.27■□□□□ 0.03
LDB2O43679 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDB2O43679 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LDB2O43679 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.26■□□□□ 0.03
LDB2O43679 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 RNU1-114P-201ENST00000365297 166 ntBASIC15.26■□□□□ 0.03
LDB2O43679 DGCR5-201ENST00000399539 862 ntBASIC15.26■□□□□ 0.03
LDB2O43679 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LDB2O43679 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.26■□□□□ 0.03
LDB2O43679 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.26■□□□□ 0.03
LDB2O43679 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.26■□□□□ 0.03
LDB2O43679 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.26■□□□□ 0.03
LDB2O43679 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.26■□□□□ 0.03
LDB2O43679 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.26■□□□□ 0.03
LDB2O43679 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LDB2O43679 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LDB2O43679 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LDB2O43679 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 NORAD-201ENST00000565493 5339 ntBASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms