Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 IGHVIII-5-2-201ENST00000522505 261 ntBASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 JTB-202ENST00000356648 1040 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 BANF1P3-201ENST00000412556 261 ntBASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 RPL7P35-201ENST00000446943 740 ntBASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 AC018463.1-201ENST00000456674 917 ntBASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC19.19■□□□□ 0.66
SHANK3Q9BYB0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC19.18■□□□□ 0.66
SHANK3Q9BYB0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 HIST2H2BA-201ENST00000412169 381 ntBASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 AC003686.1-201ENST00000550956 1034 ntBASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 AC103810.10-201ENST00000606504 343 ntBASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms