Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEC61A2Q9H9S3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SEC61A2Q9H9S3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SEC61A2Q9H9S3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
SEC61A2Q9H9S3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEC61A2Q9H9S3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SEC61A2Q9H9S3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.6■□□□□ 0.89
SEC61A2Q9H9S3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.59■□□□□ 0.89
SEC61A2Q9H9S3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEC61A2Q9H9S3 MIR4508-201ENST00000584178 70 ntBASIC20.59■□□□□ 0.89
SEC61A2Q9H9S3 LINC00543-201ENST00000567234 1845 ntBASIC20.59■□□□□ 0.89
SEC61A2Q9H9S3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SEC61A2Q9H9S3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 AC090877.2-201ENST00000558441 1738 ntBASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.58■□□□□ 0.89
SEC61A2Q9H9S3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SEC61A2Q9H9S3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SEC61A2Q9H9S3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 YBX1P4-201ENST00000392794 808 ntBASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SEC61A2Q9H9S3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 AC141586.4-201ENST00000624558 1573 ntBASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 AC103724.3-201ENST00000564481 992 ntBASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SEC61A2Q9H9S3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 AL451085.2-201ENST00000605085 799 ntBASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SEC61A2Q9H9S3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEC61A2Q9H9S3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEC61A2Q9H9S3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.52■□□□□ 0.88
SEC61A2Q9H9S3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.52■□□□□ 0.88
SEC61A2Q9H9S3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SEC61A2Q9H9S3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SEC61A2Q9H9S3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEC61A2Q9H9S3 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms