Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.34■□□□□ 0.852e-8■■■■□ 21.9
YBX3P16989 AAAS-218ENST00000551724 552 ntTSL 418.89■□□□□ 0.612e-8■■■■□ 21.9
YBX3P16989 AAAS-219ENST00000552161 585 ntTSL 217.51■□□□□ 0.392e-8■■■■□ 21.9
YBX3P16989 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC17.34■□□□□ 0.372e-8■■■■□ 21.9
YBX3P16989 AAAS-214ENST00000549821 596 ntTSL 317.19■□□□□ 0.342e-8■■■■□ 21.9
YBX3P16989 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.062e-8■■■■□ 21.9
YBX3P16989 AAAS-209ENST00000547761 827 ntTSL 514.87□□□□□ -0.032e-8■■■■□ 21.9
YBX3P16989 AAAS-208ENST00000547757 949 ntTSL 214.87□□□□□ -0.032e-8■■■■□ 21.9
YBX3P16989 AAAS-210ENST00000548258 550 ntTSL 513.91□□□□□ -0.182e-8■■■■□ 21.9
YBX3P16989 AAAS-204ENST00000546562 627 ntTSL 211.78□□□□□ -0.522e-8■■■■□ 21.9
YBX3P16989 AAAS-211ENST00000548880 577 ntTSL 26.6□□□□□ -1.352e-8■■■■□ 21.9
YBX3P16989 RAB11A-205ENST00000566233 588 ntTSL 416■□□□□ 0.152e-7■■■■□ 21.9
YBX3P16989 RAB11A-203ENST00000564910 978 ntTSL 2 BASIC15.71■□□□□ 0.112e-7■■■■□ 21.9
YBX3P16989 RAB11A-204ENST00000565075 711 ntTSL 2 BASIC14.6□□□□□ -0.072e-7■■■■□ 21.9
YBX3P16989 RAB11A-209ENST00000569896 1396 ntTSL 2 BASIC10.16□□□□□ -0.782e-7■■■■□ 21.9
YBX3P16989 RAB11A-206ENST00000567671 635 ntTSL 39.05□□□□□ -0.962e-7■■■■□ 21.9
YBX3P16989 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.132e-7■■■■□ 21.9
YBX3P16989 RAB11A-208ENST00000569304 347 ntTSL 36.1□□□□□ -1.432e-7■■■■□ 21.9
YBX3P16989 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.97e-7■■■■□ 21.9
YBX3P16989 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC22.21■■□□□ 1.154e-18■■■■□ 21.9
YBX3P16989 TXN2-205ENST00000487725 736 ntTSL 325.39■■□□□ 1.667e-9■■■■□ 21.9
YBX3P16989 TXN2-204ENST00000416967 1280 ntTSL 2 BASIC16.1■□□□□ 0.177e-9■■■■□ 21.9
YBX3P16989 TXN2-202ENST00000403313 912 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.047e-9■■■■□ 21.9
YBX3P16989 TXN2-201ENST00000216185 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 07e-9■■■■□ 21.9
YBX3P16989 TXN2-203ENST00000411915 570 ntTSL 512.2□□□□□ -0.467e-9■■■■□ 21.9
YBX3P16989 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.676e-9■■■■□ 21.9
YBX3P16989 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.076e-10■■■■□ 21.9
YBX3P16989 PTGFRN-203ENST00000497385 457 ntTSL 37.05□□□□□ -1.286e-10■■■■□ 21.9
YBX3P16989 SF3A1-206ENST00000471037 555 ntTSL 312.57□□□□□ -0.42e-8■■■■□ 21.9
YBX3P16989 IDH3G-206ENST00000444450 888 ntTSL 522.78■■□□□ 1.246e-10■■■■□ 21.8
YBX3P16989 IDH3G-211ENST00000497043 851 ntTSL 521.55■■□□□ 1.046e-10■■■■□ 21.8
YBX3P16989 IDH3G-210ENST00000495356 756 ntTSL 221.23■□□□□ 0.996e-10■■■■□ 21.8
YBX3P16989 IDH3G-205ENST00000444338 597 ntTSL 320.92■□□□□ 0.946e-10■■■■□ 21.8
YBX3P16989 SCAMP3-209ENST00000497470 845 ntTSL 524.15■■□□□ 1.467e-7■■■■□ 21.8
YBX3P16989 CHURC1-FNTB-201ENST00000549987 1468 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.137e-7■■■■□ 21.8
YBX3P16989 CHURC1-FNTB-203ENST00000552941 1847 ntTSL 214.17□□□□□ -0.147e-7■■■■□ 21.8
YBX3P16989 CHURC1-205ENST00000551947 1521 ntTSL 211.25□□□□□ -0.617e-7■■■■□ 21.8
YBX3P16989 CHURC1-202ENST00000548752 439 ntTSL 2 BASIC10.96□□□□□ -0.657e-7■■■■□ 21.8
YBX3P16989 SAMD8-204ENST00000542569 6782 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.732e-6■■■■□ 21.8
YBX3P16989 CHURC1-FNTB-204ENST00000553743 207 ntTSL 210.07□□□□□ -0.87e-7■■■■□ 21.8
YBX3P16989 CHURC1-206ENST00000552002 2566 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.897e-7■■■■□ 21.8
YBX3P16989 SAMD8-201ENST00000372687 6935 ntTSL 1 (best) BASIC9.19□□□□□ -0.942e-6■■■■□ 21.8
YBX3P16989 PTPN12-213ENST00000519553 395 ntTSL 38.82□□□□□ -17e-7■■■■□ 21.8
YBX3P16989 CHURC1-204ENST00000551093 1023 ntTSL 28.78□□□□□ -17e-7■■■■□ 21.8
YBX3P16989 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC8.24□□□□□ -1.097e-7■■■■□ 21.8
YBX3P16989 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC8.06□□□□□ -1.127e-7■■■■□ 21.8
YBX3P16989 PTPN12-214ENST00000520947 664 ntTSL 57.85□□□□□ -1.157e-7■■■■□ 21.8
YBX3P16989 CHURC1-FNTB-202ENST00000551823 517 ntTSL 26.49□□□□□ -1.377e-7■■■■□ 21.8
YBX3P16989 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC23.07■■□□□ 1.284e-7■■■■□ 21.8
YBX3P16989 BANP-214ENST00000466847 772 ntTSL 222.18■■□□□ 1.144e-7■■■■□ 21.8
YBX3P16989 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.54■□□□□ 0.724e-7■■■■□ 21.8
YBX3P16989 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.564e-7■■■■□ 21.8
YBX3P16989 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.31■□□□□ 0.524e-7■■■■□ 21.8
YBX3P16989 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.8■□□□□ 0.284e-7■■■■□ 21.8
YBX3P16989 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.33■□□□□ 0.24e-7■■■■□ 21.8
YBX3P16989 BANP-224ENST00000565242 801 ntTSL 316.27■□□□□ 0.24e-7■■■■□ 21.8
YBX3P16989 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.16■□□□□ 0.024e-7■■■■□ 21.8
YBX3P16989 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.943e-6■■■■□ 21.8
YBX3P16989 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.18■□□□□ 0.823e-6■■■■□ 21.8
YBX3P16989 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.06■□□□□ 0.83e-6■■■■□ 21.8
YBX3P16989 SPTB-206ENST00000553938 3456 ntTSL 1 (best)12.2□□□□□ -0.461e-6■■■■□ 21.8
YBX3P16989 MKNK2-205ENST00000586828 1503 ntTSL 224.4■■□□□ 1.51e-6■■■■□ 21.8
YBX3P16989 LINC00467-201ENST00000423222 3508 ntTSL 1 (best) BASIC9.77□□□□□ -0.841e-6■■■■□ 21.8
YBX3P16989 LINC00467-204ENST00000610948 469 ntTSL 27.93□□□□□ -1.141e-6■■■■□ 21.8
YBX3P16989 TNPO2-216ENST00000589956 594 ntTSL 524.05■■□□□ 1.448e-7■■■■□ 21.8
YBX3P16989 TNPO2-205ENST00000586775 945 ntTSL 321.01■□□□□ 0.958e-7■■■■□ 21.8
YBX3P16989 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.69■■■□□ 2.822e-6■■■■□ 21.8
YBX3P16989 CPNE1-207ENST00000414664 1070 ntTSL 532.6■■■□□ 2.812e-6■■■■□ 21.8
YBX3P16989 CPNE1-212ENST00000430570 1332 ntTSL 531.88■■■□□ 2.692e-6■■■■□ 21.8
YBX3P16989 CPNE1-217ENST00000439669 784 ntTSL 531.48■■■□□ 2.632e-6■■■■□ 21.8
YBX3P16989 CPNE1-220ENST00000458038 596 ntTSL 329.57■■■□□ 2.322e-6■■■■□ 21.8
YBX3P16989 CPNE1-205ENST00000401607 1795 ntTSL 529.3■■■□□ 2.282e-6■■■■□ 21.8
YBX3P16989 CPNE1-216ENST00000437340 1755 ntTSL 1 (best)29.05■■■□□ 2.242e-6■■■■□ 21.8
YBX3P16989 CPNE1-211ENST00000420363 821 ntTSL 228.41■■■□□ 2.142e-6■■■■□ 21.8
YBX3P16989 CPNE1-219ENST00000440240 746 ntTSL 528.3■■■□□ 2.122e-6■■■■□ 21.8
YBX3P16989 CPNE1-204ENST00000397443 1928 ntAPPRIS P1 TSL 525.36■■□□□ 1.652e-6■■■■□ 21.8
YBX3P16989 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.572e-6■■■■□ 21.8
YBX3P16989 CPNE1-210ENST00000416778 744 ntTSL 224■■□□□ 1.432e-6■■■■□ 21.8
YBX3P16989 CPNE1-213ENST00000434795 831 ntTSL 324■■□□□ 1.432e-6■■■■□ 21.8
YBX3P16989 CPNE1-208ENST00000414711 673 ntTSL 523.33■■□□□ 1.332e-6■■■■□ 21.8
YBX3P16989 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC23.02■■□□□ 1.282e-6■■■■□ 21.8
YBX3P16989 CPNE1-224ENST00000483359 1975 ntTSL 522.3■■□□□ 1.162e-6■■■■□ 21.8
YBX3P16989 CPNE1-215ENST00000437100 826 ntTSL 518.57■□□□□ 0.562e-6■■■■□ 21.8
YBX3P16989 CPNE1-206ENST00000412056 998 ntTSL 317.74■□□□□ 0.432e-6■■■■□ 21.8
YBX3P16989 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.172e-6■■■■□ 21.8
YBX3P16989 CPNE1-214ENST00000435747 400 ntTSL 315.48■□□□□ 0.072e-6■■■■□ 21.8
YBX3P16989 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC15.15■□□□□ 0.022e-6■■■■□ 21.8
YBX3P16989 AL109827.1-202ENST00000441563 611 ntAPPRIS ALT2 TSL 212.87□□□□□ -0.352e-6■■■■□ 21.8
YBX3P16989 AL109827.1-201ENST00000454607 679 ntAPPRIS ALT2 TSL 212.87□□□□□ -0.352e-6■■■■□ 21.8
YBX3P16989 RBM12-202ENST00000374104 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.462e-6■■■■□ 21.8
YBX3P16989 CPNE1-218ENST00000439806 748 ntTSL 511.06□□□□□ -0.642e-6■■■■□ 21.8
YBX3P16989 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.912e-6■■■■□ 21.8
YBX3P16989 DDHD2-208ENST00000526144 774 ntTSL 29.01□□□□□ -0.973e-6■■■■□ 21.8
YBX3P16989 DDHD2-204ENST00000520176 3165 ntTSL 27.52□□□□□ -1.213e-6■■■■□ 21.8
YBX3P16989 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC6.91□□□□□ -1.33e-6■■■■□ 21.8
YBX3P16989 DDHD2-215ENST00000528504 830 ntTSL 36.71□□□□□ -1.343e-6■■■■□ 21.8
YBX3P16989 DDHD2-206ENST00000524545 699 ntTSL 26.28□□□□□ -1.43e-6■■■■□ 21.8
YBX3P16989 DDHD2-213ENST00000528148 266 ntTSL 36.26□□□□□ -1.413e-6■■■■□ 21.8
YBX3P16989 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.08□□□□□ -1.63e-6■■■■□ 21.8
YBX3P16989 GTPBP3-217ENST00000598493 808 ntTSL 528.12■■■□□ 2.097e-7■■■■□ 21.8
Retrieved 100 of 29,075 protein–RNA pairs in 402.5 ms