RNA–Protein interactions for RNA: ENST00000519553.1

PTPN12-213, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-213ENST00000519553 AEBP2Q6ZN18 517 aaPredicted RBP31.84■■■□□ 2.69
PTPN12-213ENST00000519553 CHIC1Q5VXU3 224 aa31.26■■■□□ 2.59
PTPN12-213ENST00000519553 PHF23Q9BUL5 403 aaPredicted RBP27.55■■■□□ 2
PTPN12-213ENST00000519553 SENP3Q9H4L4 574 aaPredicted RBP26.9■■□□□ 1.9
PTPN12-213ENST00000519553 PLPPR3Q6T4P5 718 aa25.43■■□□□ 1.66
PTPN12-213ENST00000519553 FOXD1Q16676 465 aa24.98■■□□□ 1.59
PTPN12-213ENST00000519553 PPP6R1Q9UPN7 881 aa24.23■■□□□ 1.47
PTPN12-213ENST00000519553 ADRA2BP18089 450 aa24.19■■□□□ 1.46
PTPN12-213ENST00000519553 PIAS4Q8N2W9 510 aaPredicted RBP23.57■■□□□ 1.36
PTPN12-213ENST00000519553 MSH5O43196 834 aa22.89■■□□□ 1.25
PTPN12-213ENST00000519553 PPP4R3CPQ6ZMV5 832 aa22.45■■□□□ 1.18
PTPN12-213ENST00000519553 KCNA4P22459 653 aa22.22■■□□□ 1.15
PTPN12-213ENST00000519553 SCAF1Q9H7N4 1312 aaKnown RBP22.03■■□□□ 1.12
PTPN12-213ENST00000519553 MAPK8IP2Q13387 824 aaPredicted RBP21.89■■□□□ 1.09
PTPN12-213ENST00000519553 NCBP3Q53F19 620 aaKnown RBP21.86■■□□□ 1.09
PTPN12-213ENST00000519553 POTEDQ86YR6 584 aa21.83■■□□□ 1.09
PTPN12-213ENST00000519553 CNKSR2Q8WXI2 1034 aa21.77■■□□□ 1.08
PTPN12-213ENST00000519553 NPM3O75607 178 aaKnown RBP21.64■■□□□ 1.05
PTPN12-213ENST00000519553 DMRT2Q9Y5R5 561 aa21.53■■□□□ 1.04
PTPN12-213ENST00000519553 RNF216Q9NWF9 866 aaPredicted RBP21.3■■□□□ 1
PTPN12-213ENST00000519553 HOXD11P31277 338 aaPredicted RBP21.18■□□□□ 0.98
PTPN12-213ENST00000519553 SLC4A1APQ9BWU0 796 aaKnown RBP21.15■□□□□ 0.98
PTPN12-213ENST00000519553 DNAJC5BQ9UF47 199 aa21.01■□□□□ 0.95
PTPN12-213ENST00000519553 EHMT2Q96KQ7 1210 aa20.81■□□□□ 0.92
PTPN12-213ENST00000519553 CSRNP3Q8WYN3 585 aa20.52■□□□□ 0.88
PTPN12-213ENST00000519553 DCAF8L1A6NGE4 600 aa20.5■□□□□ 0.87
PTPN12-213ENST00000519553 ZBTB22O15209 634 aa20.5■□□□□ 0.87
PTPN12-213ENST00000519553 SLC4A2P04920 1241 aa20.41■□□□□ 0.86
PTPN12-213ENST00000519553 FOXD4L1Q9NU39 408 aa20.36■□□□□ 0.85
PTPN12-213ENST00000519553 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.1■□□□□ 0.81
PTPN12-213ENST00000519553 MYCNP04198 464 aaPredicted RBP19.96■□□□□ 0.79
PTPN12-213ENST00000519553 U3KPZ7 1027 aaPredicted RBP19.9■□□□□ 0.78
PTPN12-213ENST00000519553 RNF39Q9H2S5 420 aa19.69■□□□□ 0.74
PTPN12-213ENST00000519553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.62■□□□□ 0.73
PTPN12-213ENST00000519553 HNRNPUL2Q1KMD3 747 aaKnown RBP19.62■□□□□ 0.73
PTPN12-213ENST00000519553 ATXN8OSP0DMR3 200 aa19.61■□□□□ 0.73
PTPN12-213ENST00000519553 SAMD1Q6SPF0 538 aaPredicted RBP19.58■□□□□ 0.72
PTPN12-213ENST00000519553 ATF5Q9Y2D1 282 aaPredicted RBP19.47■□□□□ 0.71
PTPN12-213ENST00000519553 C1QBPQ07021 282 aaKnown RBP19.42■□□□□ 0.7
PTPN12-213ENST00000519553 APLP2Q06481 763 aa19.33■□□□□ 0.68
PTPN12-213ENST00000519553 SPINK5Q9NQ38 1064 aaPredicted RBP19.27■□□□□ 0.68
PTPN12-213ENST00000519553 CAPN15O75808 1086 aa19.11■□□□□ 0.65
PTPN12-213ENST00000519553 ZNF219Q9P2Y4 722 aaPredicted RBP19.09■□□□□ 0.65
PTPN12-213ENST00000519553 TRHP20396 242 aaPredicted RBP19.07■□□□□ 0.64
PTPN12-213ENST00000519553 CACNB1Q02641 598 aaPredicted RBP18.93■□□□□ 0.62
PTPN12-213ENST00000519553 POLA2Q14181 598 aa18.83■□□□□ 0.6
PTPN12-213ENST00000519553 DSG3P32926 999 aa18.81■□□□□ 0.6
PTPN12-213ENST00000519553 ABCB7O75027 752 aa18.8■□□□□ 0.6
PTPN12-213ENST00000519553 MKRN4PQ13434 485 aaPredicted RBP18.64■□□□□ 0.57
PTPN12-213ENST00000519553 FBLN2P98095 1184 aa18.52■□□□□ 0.56
PTPN12-213ENST00000519553 ZBTB12Q9Y330 459 aaPredicted RBP18.51■□□□□ 0.55
PTPN12-213ENST00000519553 FKBP8Q14318 412 aa18.49■□□□□ 0.55
PTPN12-213ENST00000519553 SPDYE4A6NLX3 237 aa18.25■□□□□ 0.51
PTPN12-213ENST00000519553 OSCARQ8IYS5 282 aa18.23■□□□□ 0.51
PTPN12-213ENST00000519553 PROM2Q8N271 834 aa18.07■□□□□ 0.48
PTPN12-213ENST00000519553 SPDYE2BA6NHP3 402 aa18.06■□□□□ 0.48
PTPN12-213ENST00000519553 SPDYE6P0CI01 402 aa18.06■□□□□ 0.48
PTPN12-213ENST00000519553 SPDYE2Q495Y8 402 aa18.06■□□□□ 0.48
PTPN12-213ENST00000519553 SSUH2Q9Y2M2 353 aa18■□□□□ 0.47
PTPN12-213ENST00000519553 ZNF692Q9BU19 519 aaPredicted RBP17.99■□□□□ 0.47
PTPN12-213ENST00000519553 RBM42Q9BTD8 480 aaKnown RBP17.85■□□□□ 0.45
PTPN12-213ENST00000519553 PABPN1Q86U42 306 aaKnown RBP eCLIP17.8■□□□□ 0.44
PTPN12-213ENST00000519553 FBXO3Q9UK99 471 aa17.71■□□□□ 0.43
PTPN12-213ENST00000519553 AKT1S1Q96B36 256 aa17.7■□□□□ 0.42
PTPN12-213ENST00000519553 REM2Q8IYK8 340 aaPredicted RBP17.55■□□□□ 0.4
PTPN12-213ENST00000519553 VASPP50552 380 aaPredicted RBP17.54■□□□□ 0.4
PTPN12-213ENST00000519553 STAG3Q9UJ98 1225 aa17.49■□□□□ 0.39
PTPN12-213ENST00000519553 SPDYE1Q8NFV5 336 aaPredicted RBP17.46■□□□□ 0.39
PTPN12-213ENST00000519553 PITPNM1O00562 1244 aa17.36■□□□□ 0.37
PTPN12-213ENST00000519553 CLEC11AQ9Y240 323 aa17.35■□□□□ 0.37
PTPN12-213ENST00000519553 IFNLR1Q8IU57 520 aaPredicted RBP17.34■□□□□ 0.37
PTPN12-213ENST00000519553 MIER1Q8N108 512 aa17.23■□□□□ 0.35
PTPN12-213ENST00000519553 PLCD3Q8N3E9 789 aa17.23■□□□□ 0.35
PTPN12-213ENST00000519553 RTN4Q9NQC3 1192 aaKnown RBP17.23■□□□□ 0.35
PTPN12-213ENST00000519553 PRR29P0C7W0 189 aa17.22■□□□□ 0.35
PTPN12-213ENST00000519553 AMER1Q5JTC6 1135 aaPredicted RBP17.21■□□□□ 0.35
PTPN12-213ENST00000519553 CREBZFQ9NS37 354 aa17.13■□□□□ 0.33
PTPN12-213ENST00000519553 KLHL34Q8N239 644 aa17.09■□□□□ 0.33
PTPN12-213ENST00000519553 PLEKHG5O94827 1062 aa17.08■□□□□ 0.32
PTPN12-213ENST00000519553 CHRDL2Q6WN34 429 aa17.05■□□□□ 0.32
PTPN12-213ENST00000519553 SPOCK2Q92563 424 aa17.03■□□□□ 0.32
PTPN12-213ENST00000519553 MNX1P50219 401 aaPredicted RBP17.02■□□□□ 0.32
PTPN12-213ENST00000519553 ZBTB47Q9UFB7 747 aaPredicted RBP17.02■□□□□ 0.32
PTPN12-213ENST00000519553 FXR2P51116 673 aaKnown RBP eCLIP17■□□□□ 0.31
PTPN12-213ENST00000519553 POTEHQ6S545 545 aa16.99■□□□□ 0.31
PTPN12-213ENST00000519553 CHADLQ6NUI6 762 aa16.96■□□□□ 0.31
PTPN12-213ENST00000519553 PIP4P2Q8N4L2 257 aa16.91■□□□□ 0.3
PTPN12-213ENST00000519553 PRKAR2AP13861 404 aaKnown RBP16.89■□□□□ 0.29
PTPN12-213ENST00000519553 NUBP1P53384 320 aa16.86■□□□□ 0.29
PTPN12-213ENST00000519553 PKD2Q13563 968 aa16.85■□□□□ 0.29
PTPN12-213ENST00000519553 FARP1Q9Y4F1 1045 aaPredicted RBP16.81■□□□□ 0.28
PTPN12-213ENST00000519553 NPM1P06748 294 aaKnown RBP eCLIP16.76■□□□□ 0.27
PTPN12-213ENST00000519553 RASEFQ8IZ41 740 aa16.74■□□□□ 0.27
PTPN12-213ENST00000519553 CIZ1Q9ULV3 898 aaPredicted RBP16.71■□□□□ 0.27
PTPN12-213ENST00000519553 FAM212AQ96EL1 285 aa16.66■□□□□ 0.26
PTPN12-213ENST00000519553 GSE1Q14687 1217 aa16.65■□□□□ 0.26
PTPN12-213ENST00000519553 ECM2O94769 699 aaPredicted RBP16.63■□□□□ 0.25
PTPN12-213ENST00000519553 DCAF8Q5TAQ9 597 aa16.62■□□□□ 0.25
PTPN12-213ENST00000519553 TRIM41Q8WV44 630 aa16.56■□□□□ 0.24
PTPN12-213ENST00000519553 TSPYL2Q9H2G4 693 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms