RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 NISCHQ9Y2I1 1504 aa22.89■■□□□ 1.26
SF3A1-206ENST00000471037 ABCC9O60706 1549 aa20.64■□□□□ 0.9
SF3A1-206ENST00000471037 CCDC180Q9P1Z9 1646 aa20.61■□□□□ 0.89
SF3A1-206ENST00000471037 RB1CC1Q8TDY2 1594 aa19.65■□□□□ 0.74
SF3A1-206ENST00000471037 NACADO15069 1562 aa19.5■□□□□ 0.71
SF3A1-206ENST00000471037 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
SF3A1-206ENST00000471037 MYO15BQ96JP2 1530 aa19.25■□□□□ 0.67
SF3A1-206ENST00000471037 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
SF3A1-206ENST00000471037 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
SF3A1-206ENST00000471037 PABPN1Q86U42 306 aaKnown RBP eCLIP19.16■□□□□ 0.66
SF3A1-206ENST00000471037 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.65
SF3A1-206ENST00000471037 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
SF3A1-206ENST00000471037 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
SF3A1-206ENST00000471037 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
SF3A1-206ENST00000471037 SCRIBQ14160 1630 aa18.71■□□□□ 0.59
SF3A1-206ENST00000471037 CC2D2AQ9P2K1 1620 aa18.67■□□□□ 0.58
SF3A1-206ENST00000471037 CECR2Q9BXF3 1484 aa18.63■□□□□ 0.57
SF3A1-206ENST00000471037 EIF4G1Q04637 1599 aaKnown RBP18.62■□□□□ 0.57
SF3A1-206ENST00000471037 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
SF3A1-206ENST00000471037 DNAJC5Q9H3Z4 198 aa17.95■□□□□ 0.46
SF3A1-206ENST00000471037 ATAD2BQ9ULI0 1458 aa17.92■□□□□ 0.46
SF3A1-206ENST00000471037 CUX2O14529 1486 aa17.89■□□□□ 0.45
SF3A1-206ENST00000471037 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
SF3A1-206ENST00000471037 SMARCA4P51532 1647 aa17.88■□□□□ 0.45
SF3A1-206ENST00000471037 SMARCA2P51531 1590 aa17.87■□□□□ 0.45
SF3A1-206ENST00000471037 ERCC6Q03468 1493 aa17.83■□□□□ 0.45
SF3A1-206ENST00000471037 BAZ1AQ9NRL2 1556 aaPredicted RBP17.79■□□□□ 0.44
SF3A1-206ENST00000471037 PEG3Q9GZU2 1588 aa17.74■□□□□ 0.43
SF3A1-206ENST00000471037 BAZ1BQ9UIG0 1483 aaKnown RBP17.73■□□□□ 0.43
SF3A1-206ENST00000471037 NESP48681 1621 aa17.7■□□□□ 0.42
SF3A1-206ENST00000471037 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
SF3A1-206ENST00000471037 LAMC3Q9Y6N6 1575 aa17.62■□□□□ 0.41
SF3A1-206ENST00000471037 THOC2Q8NI27 1593 aaKnown RBP17.6■□□□□ 0.41
SF3A1-206ENST00000471037 PDS5BQ9NTI5 1447 aa17.49■□□□□ 0.39
SF3A1-206ENST00000471037 KIF21AQ7Z4S6 1674 aa17.48■□□□□ 0.39
SF3A1-206ENST00000471037 CADPSQ9ULU8 1353 aa17.43■□□□□ 0.38
SF3A1-206ENST00000471037 WIZO95785 1651 aa17.38■□□□□ 0.37
SF3A1-206ENST00000471037 MRC2Q9UBG0 1479 aa17.36■□□□□ 0.37
SF3A1-206ENST00000471037 WDR62O43379 1518 aa17.34■□□□□ 0.37
SF3A1-206ENST00000471037 CEP164Q9UPV0 1460 aa17.26■□□□□ 0.35
SF3A1-206ENST00000471037 CFTRP13569 1480 aa17.24■□□□□ 0.35
SF3A1-206ENST00000471037 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
SF3A1-206ENST00000471037 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
SF3A1-206ENST00000471037 TOP2AP11388 1531 aaKnown RBP17.2■□□□□ 0.34
SF3A1-206ENST00000471037 URB2Q14146 1524 aaKnown RBP17.1■□□□□ 0.33
SF3A1-206ENST00000471037 TRIM41Q8WV44 630 aa17.06■□□□□ 0.32
SF3A1-206ENST00000471037 PRDM2Q13029 1718 aa17.04■□□□□ 0.32
SF3A1-206ENST00000471037 OSCARQ8IYS5 282 aa17■□□□□ 0.31
SF3A1-206ENST00000471037 CCDC88BA6NC98 1476 aa16.97■□□□□ 0.31
SF3A1-206ENST00000471037 IFT140Q96RY7 1462 aa16.93■□□□□ 0.3
SF3A1-206ENST00000471037 TOPBP1Q92547 1522 aa16.9■□□□□ 0.3
SF3A1-206ENST00000471037 ZNF608Q9ULD9 1512 aaPredicted RBP16.89■□□□□ 0.29
SF3A1-206ENST00000471037 ABCC8Q09428 1581 aa16.87■□□□□ 0.29
SF3A1-206ENST00000471037 DNMBPQ6XZF7 1577 aa16.84■□□□□ 0.29
SF3A1-206ENST00000471037 EIF4G3O43432 1585 aaKnown RBP16.81■□□□□ 0.28
SF3A1-206ENST00000471037 RIMBP3CA6NJZ7 1639 aa16.81■□□□□ 0.28
SF3A1-206ENST00000471037 RIMBP3BA6NNM3 1639 aa16.81■□□□□ 0.28
SF3A1-206ENST00000471037 RIMBP3Q9UFD9 1639 aa16.81■□□□□ 0.28
SF3A1-206ENST00000471037 TARBP1Q13395 1621 aaKnown RBP16.77■□□□□ 0.27
SF3A1-206ENST00000471037 ARHGEF11O15085 1522 aa16.76■□□□□ 0.27
SF3A1-206ENST00000471037 POLA1P09884 1462 aaPredicted RBP16.73■□□□□ 0.27
SF3A1-206ENST00000471037 AQRO60306 1485 aaKnown RBP eCLIP16.71■□□□□ 0.271e-6■■■■■ 28.2
SF3A1-206ENST00000471037 CHD1O14646 1710 aa16.67■□□□□ 0.26
SF3A1-206ENST00000471037 RAD54L2Q9Y4B4 1467 aa16.63■□□□□ 0.25
SF3A1-206ENST00000471037 WDR97A6NE52 1622 aa16.63■□□□□ 0.25
SF3A1-206ENST00000471037 SOGA1O94964 1423 aa16.62■□□□□ 0.25
SF3A1-206ENST00000471037 FGD5Q6ZNL6 1462 aa16.59■□□□□ 0.25
SF3A1-206ENST00000471037 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
SF3A1-206ENST00000471037 CYB5RLQ6IPT4 315 aa16.58■□□□□ 0.24
SF3A1-206ENST00000471037 TDRD9Q8NDG6 1382 aaKnown RBP16.58■□□□□ 0.24
SF3A1-206ENST00000471037 FBLN2P98095 1184 aa16.57■□□□□ 0.24
SF3A1-206ENST00000471037 CUX1P39880 1505 aa16.56■□□□□ 0.24
SF3A1-206ENST00000471037 SNAPC4Q5SXM2 1469 aa16.55■□□□□ 0.24
SF3A1-206ENST00000471037 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
SF3A1-206ENST00000471037 CLASP1Q7Z460 1538 aa16.53■□□□□ 0.24
SF3A1-206ENST00000471037 GRIN2BQ13224 1484 aa16.51■□□□□ 0.23
SF3A1-206ENST00000471037 SYNJ1O43426 1573 aa16.49■□□□□ 0.23
SF3A1-206ENST00000471037 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
SF3A1-206ENST00000471037 CHMP7Q8WUX9 453 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-206ENST00000471037 GAPVD1Q14C86 1478 aa16.42■□□□□ 0.22
SF3A1-206ENST00000471037 ABCA10Q8WWZ4 1543 aa16.42■□□□□ 0.22
SF3A1-206ENST00000471037 PBRM1Q86U86 1689 aa16.42■□□□□ 0.22
SF3A1-206ENST00000471037 TRHP20396 242 aaPredicted RBP16.41■□□□□ 0.22
SF3A1-206ENST00000471037 ABCA5Q8WWZ7 1642 aa16.41■□□□□ 0.22
SF3A1-206ENST00000471037 WRNQ14191 1432 aaPredicted RBP eCLIP16.31■□□□□ 0.2
SF3A1-206ENST00000471037 GRIN2AQ12879 1464 aa16.3■□□□□ 0.2
SF3A1-206ENST00000471037 BIVM-ERCC5R4GMW8 1640 aa16.29■□□□□ 0.2
SF3A1-206ENST00000471037 TOP2BQ02880 1626 aa16.28■□□□□ 0.2
SF3A1-206ENST00000471037 SUPT5HO00267 1087 aaKnown RBP16.28■□□□□ 0.2
SF3A1-206ENST00000471037 ADAMTS12P58397 1594 aa16.28■□□□□ 0.2
SF3A1-206ENST00000471037 NUP160Q12769 1436 aa16.27■□□□□ 0.19
SF3A1-206ENST00000471037 CEP170Q5SW79 1584 aa16.24■□□□□ 0.19
SF3A1-206ENST00000471037 ERCC6L2Q5T890 1561 aa16.22■□□□□ 0.19
SF3A1-206ENST00000471037 FHAD1B1AJZ9 1412 aa16.22■□□□□ 0.19
SF3A1-206ENST00000471037 ERICH3Q5RHP9 1530 aa16.21■□□□□ 0.19
SF3A1-206ENST00000471037 SHROOM2Q13796 1616 aa16.21■□□□□ 0.19
SF3A1-206ENST00000471037 PRG4Q92954 1404 aaPredicted RBP16.08■□□□□ 0.16
SF3A1-206ENST00000471037 RUSC2Q8N2Y8 1516 aa16.07■□□□□ 0.16
SF3A1-206ENST00000471037 JPH4Q96JJ6 628 aa16.04■□□□□ 0.16
SF3A1-206ENST00000471037 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms