Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.56■■□□□ 1.2
VPS4BO75351 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
VPS4BO75351 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
VPS4BO75351 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.55■■□□□ 1.2
VPS4BO75351 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VPS4BO75351 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VPS4BO75351 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VPS4BO75351 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.55■■□□□ 1.2
VPS4BO75351 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.55■■□□□ 1.2
VPS4BO75351 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.55■■□□□ 1.2
VPS4BO75351 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
VPS4BO75351 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
VPS4BO75351 HLA-L-211ENST00000482052 1765 ntBASIC22.55■■□□□ 1.2
VPS4BO75351 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VPS4BO75351 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.55■■□□□ 1.2
VPS4BO75351 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.55■■□□□ 1.2
VPS4BO75351 DUSP8P5-201ENST00000422884 1815 ntBASIC22.54■■□□□ 1.2
VPS4BO75351 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.54■■□□□ 1.2
VPS4BO75351 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
VPS4BO75351 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
VPS4BO75351 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS4BO75351 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
VPS4BO75351 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VPS4BO75351 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VPS4BO75351 AC018755.3-202ENST00000596210 929 ntBASIC22.53■■□□□ 1.2
VPS4BO75351 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VPS4BO75351 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
VPS4BO75351 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VPS4BO75351 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.53■■□□□ 1.2
VPS4BO75351 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
VPS4BO75351 AC103834.1-201ENST00000520383 144 ntBASIC22.52■■□□□ 1.2
VPS4BO75351 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
VPS4BO75351 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
VPS4BO75351 FOXO3B-201ENST00000395675 1928 ntBASIC22.52■■□□□ 1.2
VPS4BO75351 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
VPS4BO75351 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.52■■□□□ 1.2
VPS4BO75351 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
VPS4BO75351 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VPS4BO75351 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
VPS4BO75351 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VPS4BO75351 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VPS4BO75351 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
VPS4BO75351 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.51■■□□□ 1.19
VPS4BO75351 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.51■■□□□ 1.19
VPS4BO75351 MIR935-201ENST00000401179 91 ntBASIC22.51■■□□□ 1.19
VPS4BO75351 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.51■■□□□ 1.19
VPS4BO75351 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.51■■□□□ 1.19
VPS4BO75351 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.51■■□□□ 1.19
VPS4BO75351 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
VPS4BO75351 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.51■■□□□ 1.19
VPS4BO75351 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VPS4BO75351 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
VPS4BO75351 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
VPS4BO75351 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VPS4BO75351 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.5■■□□□ 1.19
VPS4BO75351 SPCS2P3-201ENST00000500401 656 ntBASIC22.5■■□□□ 1.19
VPS4BO75351 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VPS4BO75351 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
VPS4BO75351 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.5■■□□□ 1.19
VPS4BO75351 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
VPS4BO75351 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
VPS4BO75351 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
VPS4BO75351 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.5■■□□□ 1.19
VPS4BO75351 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS4BO75351 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS4BO75351 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VPS4BO75351 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.49■■□□□ 1.19
VPS4BO75351 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS4BO75351 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.49■■□□□ 1.19
VPS4BO75351 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS4BO75351 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
VPS4BO75351 AC068473.5-201ENST00000616428 2072 ntBASIC22.49■■□□□ 1.19
VPS4BO75351 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
VPS4BO75351 ABCB10P4-201ENST00000566803 2184 ntBASIC22.49■■□□□ 1.19
VPS4BO75351 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
VPS4BO75351 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.49■■□□□ 1.19
VPS4BO75351 RAP2CP1-202ENST00000605179 643 ntBASIC22.48■■□□□ 1.19
VPS4BO75351 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.47■■□□□ 1.19
VPS4BO75351 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.47■■□□□ 1.19
VPS4BO75351 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
VPS4BO75351 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.47■■□□□ 1.19
VPS4BO75351 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VPS4BO75351 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VPS4BO75351 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VPS4BO75351 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
VPS4BO75351 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
VPS4BO75351 AC133561.1-201ENST00000568600 2415 ntBASIC22.47■■□□□ 1.19
VPS4BO75351 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VPS4BO75351 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
VPS4BO75351 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VPS4BO75351 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
VPS4BO75351 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms