Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 AC018529.2-202ENST00000611482 3087 ntBASIC13.47□□□□□ -0.25
NKX3-1Q99801 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 CNN2P11-201ENST00000429351 262 ntBASIC13.47□□□□□ -0.25
NKX3-1Q99801 AL592309.1-201ENST00000443127 649 ntBASIC13.47□□□□□ -0.25
NKX3-1Q99801 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 RARRES2P9-201ENST00000565168 469 ntBASIC13.47□□□□□ -0.25
NKX3-1Q99801 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NKX3-1Q99801 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.47□□□□□ -0.25
NKX3-1Q99801 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 AP000845.1-201ENST00000581677 2131 ntBASIC13.46□□□□□ -0.25
NKX3-1Q99801 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms