Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC8.62□□□□□ -1.032e-7■□□□□ 9.9
YBX3P16989 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.362e-7■□□□□ 9.9
YBX3P16989 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.26□□□□□ -1.572e-7■□□□□ 9.9
YBX3P16989 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.15□□□□□ -1.742e-7■□□□□ 9.9
YBX3P16989 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.05□□□□□ -1.762e-7■□□□□ 9.9
YBX3P16989 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.87□□□□□ -1.792e-7■□□□□ 9.9
YBX3P16989 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.87□□□□□ -1.792e-7■□□□□ 9.9
YBX3P16989 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.82e-7■□□□□ 9.9
YBX3P16989 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.66□□□□□ -1.822e-7■□□□□ 9.9
YBX3P16989 IMPDH2-202ENST00000429182 1469 ntTSL 516.99■□□□□ 0.315e-10■□□□□ 9.9
YBX3P16989 IMPDH2-204ENST00000462980 908 ntTSL 213.66□□□□□ -0.225e-10■□□□□ 9.9
YBX3P16989 IMPDH2-201ENST00000326739 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.235e-10■□□□□ 9.9
YBX3P16989 IMPDH2-203ENST00000442157 865 ntTSL 212.56□□□□□ -0.45e-10■□□□□ 9.9
YBX3P16989 P4HB-219ENST00000574914 571 ntTSL 427.89■■■□□ 2.062e-11■□□□□ 9.9
YBX3P16989 P4HB-224ENST00000576541 571 ntTSL 527.89■■■□□ 2.062e-11■□□□□ 9.9
YBX3P16989 RPS10-NUDT3-202ENST00000639725 4782 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.732e-7■□□□□ 9.9
YBX3P16989 LARS-202ENST00000394434 4766 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.841e-8■□□□□ 9.9
YBX3P16989 LARS-212ENST00000510191 3737 ntTSL 2 BASIC7.45□□□□□ -1.221e-8■□□□□ 9.9
YBX3P16989 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.56□□□□□ -1.361e-8■□□□□ 9.9
YBX3P16989 ESD-203ENST00000412582 921 ntTSL 37.52□□□□□ -1.212e-6■□□□□ 9.9
YBX3P16989 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.22■■□□□ 1.951e-6■□□□□ 9.9
YBX3P16989 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.051e-6■□□□□ 9.9
YBX3P16989 PCBP2-212ENST00000548190 581 ntTSL 515.23■□□□□ 0.037e-35■□□□□ 9.9
YBX3P16989 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.272e-6■□□□□ 9.9
YBX3P16989 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC7.04□□□□□ -1.282e-6■□□□□ 9.9
YBX3P16989 TRA2A-204ENST00000474586 868 ntTSL 328.68■■■□□ 2.181e-9■□□□□ 9.9
YBX3P16989 TRA2A-203ENST00000448549 582 ntTSL 421.41■■□□□ 1.021e-9■□□□□ 9.9
YBX3P16989 TRA2A-208ENST00000490942 862 ntTSL 1 (best)19.82■□□□□ 0.761e-9■□□□□ 9.9
YBX3P16989 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.721e-9■□□□□ 9.9
YBX3P16989 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.551e-9■□□□□ 9.9
YBX3P16989 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.521e-9■□□□□ 9.9
YBX3P16989 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.241e-9■□□□□ 9.9
YBX3P16989 TRA2A-209ENST00000494255 1653 ntTSL 1 (best)15.79■□□□□ 0.121e-9■□□□□ 9.9
YBX3P16989 ALDH1A2-209ENST00000558384 466 ntTSL 36.66□□□□□ -1.343e-9■□□□□ 9.9
YBX3P16989 RPL26-210ENST00000584343 747 ntTSL 515.27■□□□□ 0.044e-21■□□□□ 9.9
YBX3P16989 CFB-280ENST00000482312 764 ntTSL 210.31□□□□□ -0.761e-6■□□□□ 9.9
YBX3P16989 NGLY1-208ENST00000461491 552 ntTSL 45.97□□□□□ -1.453e-9■□□□□ 9.9
YBX3P16989 NUP205-208ENST00000490439 653 ntTSL 310.41□□□□□ -0.745e-10■□□□□ 9.9
YBX3P16989 ZNHIT3-207ENST00000619482 561 ntTSL 223.16■■□□□ 1.38e-9■□□□□ 9.9
YBX3P16989 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.112e-8■□□□□ 9.9
YBX3P16989 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC37.03■■■■□ 3.522e-8■□□□□ 9.9
YBX3P16989 GTPBP1-202ENST00000418601 810 ntTSL 228.09■■■□□ 2.091e-9■□□□□ 9.9
YBX3P16989 FN1-222ENST00000485567 584 ntTSL 1 (best)5.54□□□□□ -1.521e-323■□□□□ 9.9
YBX3P16989 CLPTM1-210ENST00000589158 749 ntTSL 418.37■□□□□ 0.532e-8■□□□□ 9.9
YBX3P16989 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.96■■■□□ 2.713e-6■□□□□ 9.9
YBX3P16989 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.713e-6■□□□□ 9.9
YBX3P16989 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC28.48■■■□□ 2.153e-6■□□□□ 9.9
YBX3P16989 FLOT2-209ENST00000584569 266 ntTSL 318.92■□□□□ 0.622e-6■□□□□ 9.9
YBX3P16989 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.63e-6■□□□□ 9.9
YBX3P16989 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.133e-6■□□□□ 9.9
YBX3P16989 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.033e-6■□□□□ 9.9
YBX3P16989 B4GALT3-207ENST00000470882 3178 ntTSL 512.04□□□□□ -0.483e-6■□□□□ 9.9
YBX3P16989 B4GALT3-209ENST00000486938 308 ntTSL 210.85□□□□□ -0.673e-6■□□□□ 9.9
YBX3P16989 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.355e-6■□□□□ 9.9
YBX3P16989 POLR1B-213ENST00000484574 551 ntTSL 215.74■□□□□ 0.113e-6■□□□□ 9.9
YBX3P16989 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.94□□□□□ -0.185e-6■□□□□ 9.9
YBX3P16989 POLR1B-210ENST00000458012 923 ntTSL 512.19□□□□□ -0.463e-6■□□□□ 9.9
YBX3P16989 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.794e-46■□□□□ 9.9
YBX3P16989 ACTB-213ENST00000493945 1236 ntTSL 518.21■□□□□ 0.514e-46■□□□□ 9.9
YBX3P16989 ACTB-204ENST00000425660 1845 ntTSL 1 (best)17.42■□□□□ 0.384e-46■□□□□ 9.9
YBX3P16989 ACTB-207ENST00000462494 2245 ntTSL 517.31■□□□□ 0.364e-46■□□□□ 9.9
YBX3P16989 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.988e-7■□□□□ 9.9
YBX3P16989 SNRNP25-201ENST00000293861 1905 ntAPPRIS ALT2 TSL 1 (best)23.88■■□□□ 1.418e-7■□□□□ 9.9
YBX3P16989 SNRNP25-203ENST00000397876 831 ntTSL 319.45■□□□□ 0.78e-7■□□□□ 9.9
YBX3P16989 SNRNP25-205ENST00000466183 1130 ntTSL 211.56□□□□□ -0.568e-7■□□□□ 9.9
YBX3P16989 SYPL1-201ENST00000011473 2127 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.031e-7■□□□□ 9.9
YBX3P16989 SYPL1-202ENST00000455385 2151 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.291e-7■□□□□ 9.9
YBX3P16989 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC8.91□□□□□ -0.981e-7■□□□□ 9.9
YBX3P16989 SYPL1-207ENST00000634737 835 ntTSL 57.4□□□□□ -1.221e-7■□□□□ 9.9
YBX3P16989 ATP5B-203ENST00000547808 705 ntTSL 526.15■■□□□ 1.785e-46■□□□□ 9.9
YBX3P16989 ATP5B-210ENST00000552959 1085 ntTSL 326.15■■□□□ 1.785e-46■□□□□ 9.9
YBX3P16989 ATP5B-207ENST00000551020 856 ntTSL 324.61■■□□□ 1.535e-46■□□□□ 9.9
YBX3P16989 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.945e-46■□□□□ 9.9
YBX3P16989 ATP5B-206ENST00000550162 863 ntTSL 216.74■□□□□ 0.275e-46■□□□□ 9.9
YBX3P16989 ATP5B-202ENST00000547250 840 ntTSL 511.71□□□□□ -0.535e-46■□□□□ 9.9
YBX3P16989 ATP5B-204ENST00000548474 449 ntTSL 38.26□□□□□ -1.095e-46■□□□□ 9.9
YBX3P16989 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.182e-7■□□□□ 9.9
YBX3P16989 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.092e-7■□□□□ 9.9
YBX3P16989 XRCC6-203ENST00000402580 2006 ntTSL 2 BASIC13.22□□□□□ -0.292e-7■□□□□ 9.9
YBX3P16989 XRCC6-205ENST00000405878 2200 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.422e-7■□□□□ 9.9
YBX3P16989 XRCC6-206ENST00000428575 2148 ntTSL 2 BASIC11.87□□□□□ -0.512e-7■□□□□ 9.9
YBX3P16989 XRCC6-204ENST00000405506 1958 ntTSL 5 BASIC11.65□□□□□ -0.552e-7■□□□□ 9.9
YBX3P16989 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.871e-7■□□□□ 9.9
YBX3P16989 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.48■■□□□ 1.671e-7■□□□□ 9.9
YBX3P16989 FNTA-205ENST00000526755 4676 ntTSL 1 (best)16.24■□□□□ 0.191e-7■□□□□ 9.9
YBX3P16989 FNTA-203ENST00000525099 7327 ntTSL 27.76□□□□□ -1.171e-7■□□□□ 9.9
YBX3P16989 CP-211ENST00000489736 1756 ntTSL 1 (best)7.67□□□□□ -1.182e-9■□□□□ 9.9
YBX3P16989 CP-210ENST00000481169 3411 ntTSL 26.99□□□□□ -1.292e-9■□□□□ 9.9
YBX3P16989 CP-212ENST00000490639 3105 ntTSL 1 (best)6.7□□□□□ -1.342e-9■□□□□ 9.9
YBX3P16989 CP-213ENST00000494544 2806 ntTSL 1 (best)5.63□□□□□ -1.512e-9■□□□□ 9.9
YBX3P16989 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.552e-9■□□□□ 9.9
YBX3P16989 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.194e-7■□□□□ 9.9
YBX3P16989 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.654e-7■□□□□ 9.9
YBX3P16989 UAP1-202ENST00000367924 2066 ntAPPRIS ALT1 TSL 5 BASIC9.95□□□□□ -0.824e-7■□□□□ 9.9
YBX3P16989 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC8.95□□□□□ -0.984e-7■□□□□ 9.9
YBX3P16989 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.055e-9■□□□□ 9.9
YBX3P16989 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC14.05□□□□□ -0.165e-9■□□□□ 9.9
YBX3P16989 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.185e-9■□□□□ 9.9
YBX3P16989 NRDC-210ENST00000485608 3149 ntTSL 27.88□□□□□ -1.155e-9■□□□□ 9.9
YBX3P16989 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.425e-9■□□□□ 9.9
Retrieved 100 of 29,075 protein–RNA pairs in 181.3 ms