RNA–Protein interactions for RNA: ENST00000485567.1

FN1-222, Transcript of fibronectin 1, humanhuman

TSL 1 (best)

Gene FN1, Length 584 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-222ENST00000485567 CHIC1Q5VXU3 224 aa17.25■□□□□ 0.35
FN1-222ENST00000485567 AEBP2Q6ZN18 517 aaPredicted RBP17.19■□□□□ 0.34
FN1-222ENST00000485567 PHF23Q9BUL5 403 aaPredicted RBP15.2■□□□□ 0.02
FN1-222ENST00000485567 SENP3Q9H4L4 574 aaPredicted RBP14.56□□□□□ -0.08
FN1-222ENST00000485567 PLPPR3Q6T4P5 718 aa14.21□□□□□ -0.13
FN1-222ENST00000485567 FOXD1Q16676 465 aa13.42□□□□□ -0.26
FN1-222ENST00000485567 ADRA2BP18089 450 aa13.25□□□□□ -0.29
FN1-222ENST00000485567 PPP6R1Q9UPN7 881 aa13.25□□□□□ -0.29
FN1-222ENST00000485567 PIAS4Q8N2W9 510 aaPredicted RBP12.75□□□□□ -0.37
FN1-222ENST00000485567 KCNA4P22459 653 aa12.72□□□□□ -0.37
FN1-222ENST00000485567 PPP4R3CPQ6ZMV5 832 aa12.56□□□□□ -0.4
FN1-222ENST00000485567 NCBP3Q53F19 620 aaKnown RBP12.39□□□□□ -0.43
FN1-222ENST00000485567 EHMT2Q96KQ7 1210 aa12.29□□□□□ -0.44
FN1-222ENST00000485567 MSH5O43196 834 aa12.24□□□□□ -0.45
FN1-222ENST00000485567 SLC4A1APQ9BWU0 796 aaKnown RBP12.22□□□□□ -0.45
FN1-222ENST00000485567 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
FN1-222ENST00000485567 NPM3O75607 178 aaKnown RBP12.16□□□□□ -0.46
FN1-222ENST00000485567 CNKSR2Q8WXI2 1034 aa12.14□□□□□ -0.47
FN1-222ENST00000485567 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
FN1-222ENST00000485567 MAPK8IP2Q13387 824 aaPredicted RBP11.89□□□□□ -0.51
FN1-222ENST00000485567 DNAJC5BQ9UF47 199 aa11.86□□□□□ -0.51
FN1-222ENST00000485567 RNF216Q9NWF9 866 aaPredicted RBP11.79□□□□□ -0.52
FN1-222ENST00000485567 ZBTB22O15209 634 aa11.71□□□□□ -0.53
FN1-222ENST00000485567 DMRT2Q9Y5R5 561 aa11.69□□□□□ -0.54
FN1-222ENST00000485567 HOXD11P31277 338 aaPredicted RBP11.64□□□□□ -0.55
FN1-222ENST00000485567 FOXD4L1Q9NU39 408 aa11.62□□□□□ -0.55
FN1-222ENST00000485567 SLC4A2P04920 1241 aa11.38□□□□□ -0.59
FN1-222ENST00000485567 MYCNP04198 464 aaPredicted RBP11.25□□□□□ -0.61
FN1-222ENST00000485567 ATXN8OSP0DMR3 200 aa11.24□□□□□ -0.61
FN1-222ENST00000485567 DCAF8L1A6NGE4 600 aa11.07□□□□□ -0.64
FN1-222ENST00000485567 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.05□□□□□ -0.64
FN1-222ENST00000485567 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.98□□□□□ -0.65
FN1-222ENST00000485567 HNRNPUL2Q1KMD3 747 aaKnown RBP10.98□□□□□ -0.65
FN1-222ENST00000485567 SAMD1Q6SPF0 538 aaPredicted RBP10.95□□□□□ -0.66
FN1-222ENST00000485567 U3KPZ7 1027 aaPredicted RBP10.92□□□□□ -0.66
FN1-222ENST00000485567 ATF5Q9Y2D1 282 aaPredicted RBP10.87□□□□□ -0.67
FN1-222ENST00000485567 POTEDQ86YR6 584 aa10.86□□□□□ -0.67
FN1-222ENST00000485567 FKBP8Q14318 412 aa10.81□□□□□ -0.68
FN1-222ENST00000485567 APLP2Q06481 763 aa10.77□□□□□ -0.69
FN1-222ENST00000485567 ZNF219Q9P2Y4 722 aaPredicted RBP10.69□□□□□ -0.7
FN1-222ENST00000485567 AMER1Q5JTC6 1135 aaPredicted RBP10.66□□□□□ -0.7
FN1-222ENST00000485567 RTN4Q9NQC3 1192 aaKnown RBP10.6□□□□□ -0.71
FN1-222ENST00000485567 RNF39Q9H2S5 420 aa10.53□□□□□ -0.72
FN1-222ENST00000485567 C1QBPQ07021 282 aaKnown RBP10.45□□□□□ -0.74
FN1-222ENST00000485567 SPINK5Q9NQ38 1064 aaPredicted RBP10.45□□□□□ -0.74
FN1-222ENST00000485567 TRHP20396 242 aaPredicted RBP10.44□□□□□ -0.74
FN1-222ENST00000485567 MKRN4PQ13434 485 aaPredicted RBP10.44□□□□□ -0.74
FN1-222ENST00000485567 SPDYE4A6NLX3 237 aa10.42□□□□□ -0.74
FN1-222ENST00000485567 FBLN2P98095 1184 aa10.42□□□□□ -0.74
FN1-222ENST00000485567 CAPN15O75808 1086 aa10.4□□□□□ -0.74
FN1-222ENST00000485567 POLA2Q14181 598 aa10.4□□□□□ -0.74
FN1-222ENST00000485567 FBXO3Q9UK99 471 aa10.38□□□□□ -0.75
FN1-222ENST00000485567 PROM2Q8N271 834 aa10.36□□□□□ -0.75
FN1-222ENST00000485567 ZBTB12Q9Y330 459 aaPredicted RBP10.31□□□□□ -0.76
FN1-222ENST00000485567 SLC24A1O60721 1099 aa10.3□□□□□ -0.76
FN1-222ENST00000485567 ABCB7O75027 752 aa10.21□□□□□ -0.77
FN1-222ENST00000485567 VASPP50552 380 aaPredicted RBP10.19□□□□□ -0.78
FN1-222ENST00000485567 DSG3P32926 999 aa10.16□□□□□ -0.78
FN1-222ENST00000485567 IFNLR1Q8IU57 520 aaPredicted RBP10.07□□□□□ -0.8
FN1-222ENST00000485567 SPDYE2BA6NHP3 402 aa10.06□□□□□ -0.8
FN1-222ENST00000485567 SPDYE6P0CI01 402 aa10.06□□□□□ -0.8
FN1-222ENST00000485567 SPDYE2Q495Y8 402 aa10.06□□□□□ -0.8
FN1-222ENST00000485567 ZNF692Q9BU19 519 aaPredicted RBP10.06□□□□□ -0.8
FN1-222ENST00000485567 SSUH2Q9Y2M2 353 aa10.02□□□□□ -0.81
FN1-222ENST00000485567 STAG3Q9UJ98 1225 aa10.01□□□□□ -0.81
FN1-222ENST00000485567 OSCARQ8IYS5 282 aa9.99□□□□□ -0.81
FN1-222ENST00000485567 PABPN1Q86U42 306 aaKnown RBP eCLIP9.93□□□□□ -0.82
FN1-222ENST00000485567 CACNB1Q02641 598 aaPredicted RBP9.91□□□□□ -0.82
FN1-222ENST00000485567 PKD2Q13563 968 aa9.91□□□□□ -0.82
FN1-222ENST00000485567 SPOCK2Q92563 424 aa9.91□□□□□ -0.82
FN1-222ENST00000485567 KLHL34Q8N239 644 aa9.9□□□□□ -0.82
FN1-222ENST00000485567 PLCD3Q8N3E9 789 aa9.86□□□□□ -0.83
FN1-222ENST00000485567 PLCB2Q00722 1185 aa9.84□□□□□ -0.83
FN1-222ENST00000485567 MIER1Q8N108 512 aa9.83□□□□□ -0.84
FN1-222ENST00000485567 DCAF8L2P0C7V8 631 aa9.78□□□□□ -0.84
FN1-222ENST00000485567 PLEKHG5O94827 1062 aa9.77□□□□□ -0.85
FN1-222ENST00000485567 ZBTB47Q9UFB7 747 aaPredicted RBP9.77□□□□□ -0.85
FN1-222ENST00000485567 ECM2O94769 699 aaPredicted RBP9.76□□□□□ -0.85
FN1-222ENST00000485567 RBM42Q9BTD8 480 aaKnown RBP9.69□□□□□ -0.86
FN1-222ENST00000485567 BBXQ8WY36 941 aaPredicted RBP9.68□□□□□ -0.86
FN1-222ENST00000485567 AKT1S1Q96B36 256 aa9.67□□□□□ -0.86
FN1-222ENST00000485567 RGL2O15211 777 aa9.65□□□□□ -0.86
FN1-222ENST00000485567 SPDYE1Q8NFV5 336 aaPredicted RBP9.65□□□□□ -0.86
FN1-222ENST00000485567 TRIM41Q8WV44 630 aa9.65□□□□□ -0.86
FN1-222ENST00000485567 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.65□□□□□ -0.86
FN1-222ENST00000485567 HAP1P54257 671 aaPredicted RBP9.64□□□□□ -0.87
FN1-222ENST00000485567 CIZ1Q9ULV3 898 aaPredicted RBP9.64□□□□□ -0.87
FN1-222ENST00000485567 NPM1P06748 294 aaKnown RBP eCLIP9.62□□□□□ -0.87
FN1-222ENST00000485567 GSE1Q14687 1217 aa9.59□□□□□ -0.87
FN1-222ENST00000485567 VSIG10Q8N0Z9 540 aa9.59□□□□□ -0.87
FN1-222ENST00000485567 NUBP1P53384 320 aa9.56□□□□□ -0.88
FN1-222ENST00000485567 REM2Q8IYK8 340 aaPredicted RBP9.55□□□□□ -0.88
FN1-222ENST00000485567 PRR29P0C7W0 189 aa9.54□□□□□ -0.88
FN1-222ENST00000485567 PAXIP1Q6ZW49 1069 aaPredicted RBP9.53□□□□□ -0.88
FN1-222ENST00000485567 CLEC11AQ9Y240 323 aa9.53□□□□□ -0.88
FN1-222ENST00000485567 CREBZFQ9NS37 354 aa9.52□□□□□ -0.89
FN1-222ENST00000485567 SPRYD3Q8NCJ5 442 aa9.51□□□□□ -0.89
FN1-222ENST00000485567 CHGAP10645 457 aaKnown RBP9.5□□□□□ -0.89
FN1-222ENST00000485567 MNX1P50219 401 aaPredicted RBP9.49□□□□□ -0.89
FN1-222ENST00000485567 DCAF8Q5TAQ9 597 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms