Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.74□□□□□ -0.37
SNCAP37840 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.74□□□□□ -0.37
SNCAP37840 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.74□□□□□ -0.37
SNCAP37840 MRPL3P1-201ENST00000400109 1033 ntBASIC12.74□□□□□ -0.37
SNCAP37840 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 GPX1P2-201ENST00000429271 606 ntBASIC12.74□□□□□ -0.37
SNCAP37840 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 AC018845.2-201ENST00000568326 409 ntBASIC12.74□□□□□ -0.37
SNCAP37840 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.74□□□□□ -0.37
SNCAP37840 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC12.74□□□□□ -0.37
SNCAP37840 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
SNCAP37840 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.74□□□□□ -0.37
SNCAP37840 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
SNCAP37840 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 TCAF1P1-201ENST00000414990 2232 ntBASIC12.74□□□□□ -0.37
SNCAP37840 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.74□□□□□ -0.37
SNCAP37840 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.74□□□□□ -0.37
SNCAP37840 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
SNCAP37840 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
SNCAP37840 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
SNCAP37840 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SNCAP37840 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 AC104109.2-201ENST00000602919 1418 ntBASIC12.73□□□□□ -0.37
SNCAP37840 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.73□□□□□ -0.37
SNCAP37840 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.73□□□□□ -0.37
SNCAP37840 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.73□□□□□ -0.37
SNCAP37840 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
SNCAP37840 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
SNCAP37840 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
SNCAP37840 TPM4P1-201ENST00000436100 807 ntBASIC12.73□□□□□ -0.37
SNCAP37840 AC105233.2-201ENST00000523697 349 ntBASIC12.73□□□□□ -0.37
SNCAP37840 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.73□□□□□ -0.37
SNCAP37840 AF228730.5-201ENST00000530288 346 ntBASIC12.73□□□□□ -0.37
SNCAP37840 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC12.73□□□□□ -0.37
SNCAP37840 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
SNCAP37840 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.73□□□□□ -0.37
SNCAP37840 SPTSSB-204ENST00000617024 1292 ntBASIC12.73□□□□□ -0.37
SNCAP37840 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
SNCAP37840 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.73□□□□□ -0.37
SNCAP37840 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.73□□□□□ -0.37
SNCAP37840 COL6A4P2-202ENST00000504443 2753 ntBASIC12.73□□□□□ -0.37
SNCAP37840 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.73□□□□□ -0.37
SNCAP37840 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC12.73□□□□□ -0.37
SNCAP37840 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SNCAP37840 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SNCAP37840 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
SNCAP37840 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.72□□□□□ -0.37
SNCAP37840 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.72□□□□□ -0.37
SNCAP37840 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SNCAP37840 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SNCAP37840 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SNCAP37840 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SNCAP37840 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SNCAP37840 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SNCAP37840 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms