RNA–Protein interactions for RNA: ENST00000560098.5

CRTC3-208, Transcript of CREB regulated transcription coactivator 3, humanhuman

TSL 1 (best) BASIC

Gene CRTC3, Length 1,421 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRTC3-208ENST00000560098 NISCHQ9Y2I1 1504 aa43.62■■■■■ 4.57
CRTC3-208ENST00000560098 ABCC9O60706 1549 aa39.13■■■■□ 3.85
CRTC3-208ENST00000560098 CCDC180Q9P1Z9 1646 aa39.11■■■■□ 3.85
CRTC3-208ENST00000560098 RB1CC1Q8TDY2 1594 aa37.25■■■■□ 3.55
CRTC3-208ENST00000560098 NACADO15069 1562 aa37.01■■■■□ 3.51
CRTC3-208ENST00000560098 DCAF8L2P0C7V8 631 aa36.84■■■■□ 3.49
CRTC3-208ENST00000560098 DNAJC5BQ9UF47 199 aa36.72■■■■□ 3.47
CRTC3-208ENST00000560098 MYO15BQ96JP2 1530 aa36.51■■■■□ 3.43
CRTC3-208ENST00000560098 PABPN1Q86U42 306 aaKnown RBP eCLIP36.46■■■■□ 3.43
CRTC3-208ENST00000560098 UNC13AQ9UPW8 1703 aa36.34■■■■□ 3.41
CRTC3-208ENST00000560098 BICRAQ9NZM4 1560 aa36.16■■■■□ 3.38
CRTC3-208ENST00000560098 ZCCHC6Q5VYS8 1495 aaKnown RBP36.15■■■■□ 3.38
CRTC3-208ENST00000560098 DCAF1Q9Y4B6 1507 aa36.04■■■■□ 3.36
CRTC3-208ENST00000560098 SHROOM4Q9ULL8 1493 aa35.7■■■■□ 3.31
CRTC3-208ENST00000560098 SCRIBQ14160 1630 aa35.64■■■■□ 3.3
CRTC3-208ENST00000560098 CC2D2AQ9P2K1 1620 aa35.34■■■■□ 3.25
CRTC3-208ENST00000560098 EIF4G1Q04637 1599 aaKnown RBP35.28■■■■□ 3.24
CRTC3-208ENST00000560098 CECR2Q9BXF3 1484 aa35.27■■■■□ 3.24
CRTC3-208ENST00000560098 NCAPD3P42695 1498 aa34.18■■■■□ 3.06
CRTC3-208ENST00000560098 ATAD2BQ9ULI0 1458 aa34.06■■■■□ 3.04
CRTC3-208ENST00000560098 SMARCA4P51532 1647 aa34.01■■■■□ 3.03
CRTC3-208ENST00000560098 SMARCA2P51531 1590 aa33.96■■■■□ 3.03
CRTC3-208ENST00000560098 HMGXB3Q12766 1538 aa33.91■■■■□ 3.02
CRTC3-208ENST00000560098 BAZ1AQ9NRL2 1556 aaPredicted RBP33.85■■■■□ 3.01
CRTC3-208ENST00000560098 ERCC6Q03468 1493 aa33.81■■■■□ 3
CRTC3-208ENST00000560098 CUX2O14529 1486 aa33.74■■■□□ 2.99
CRTC3-208ENST00000560098 BAZ1BQ9UIG0 1483 aaKnown RBP33.74■■■□□ 2.99
CRTC3-208ENST00000560098 DNAJC5Q9H3Z4 198 aa33.73■■■□□ 2.99
CRTC3-208ENST00000560098 PEG3Q9GZU2 1588 aa33.69■■■□□ 2.98
CRTC3-208ENST00000560098 NESP48681 1621 aa33.61■■■□□ 2.97
CRTC3-208ENST00000560098 MROH2BQ7Z745 1585 aa33.6■■■□□ 2.97
CRTC3-208ENST00000560098 LAMC3Q9Y6N6 1575 aa33.39■■■□□ 2.94
CRTC3-208ENST00000560098 THOC2Q8NI27 1593 aaKnown RBP33.26■■■□□ 2.91
CRTC3-208ENST00000560098 PDS5BQ9NTI5 1447 aa33.22■■■□□ 2.91
CRTC3-208ENST00000560098 WIZO95785 1651 aa33.18■■■□□ 2.9
CRTC3-208ENST00000560098 KIF21AQ7Z4S6 1674 aa33.15■■■□□ 2.9
CRTC3-208ENST00000560098 CADPSQ9ULU8 1353 aa33.15■■■□□ 2.9
CRTC3-208ENST00000560098 RSF1Q96T23 1441 aaPredicted RBP32.93■■■□□ 2.86
CRTC3-208ENST00000560098 MRC2Q9UBG0 1479 aa32.92■■■□□ 2.86
CRTC3-208ENST00000560098 WDR62O43379 1518 aa32.83■■■□□ 2.85
CRTC3-208ENST00000560098 CEP164Q9UPV0 1460 aa32.79■■■□□ 2.84
CRTC3-208ENST00000560098 TOP2AP11388 1531 aaKnown RBP32.78■■■□□ 2.84
CRTC3-208ENST00000560098 CFTRP13569 1480 aa32.76■■■□□ 2.84
CRTC3-208ENST00000560098 FANCD2Q9BXW9 1451 aa32.75■■■□□ 2.83
CRTC3-208ENST00000560098 URB2Q14146 1524 aaKnown RBP32.47■■■□□ 2.79
CRTC3-208ENST00000560098 CCDC88BA6NC98 1476 aa32.42■■■□□ 2.78
CRTC3-208ENST00000560098 PRDM2Q13029 1718 aa32.35■■■□□ 2.77
CRTC3-208ENST00000560098 TRIM41Q8WV44 630 aa32.25■■■□□ 2.75
CRTC3-208ENST00000560098 OSCARQ8IYS5 282 aa32.23■■■□□ 2.75
CRTC3-208ENST00000560098 IFT140Q96RY7 1462 aa32.14■■■□□ 2.74
CRTC3-208ENST00000560098 TOPBP1Q92547 1522 aa32.13■■■□□ 2.73
CRTC3-208ENST00000560098 ABCC8Q09428 1581 aa32.08■■■□□ 2.73
CRTC3-208ENST00000560098 ZNF608Q9ULD9 1512 aaPredicted RBP32.08■■■□□ 2.73
CRTC3-208ENST00000560098 DNMBPQ6XZF7 1577 aa32.01■■■□□ 2.71
CRTC3-208ENST00000560098 EIF4G3O43432 1585 aaKnown RBP31.88■■■□□ 2.69
CRTC3-208ENST00000560098 TARBP1Q13395 1621 aaKnown RBP31.83■■■□□ 2.69
CRTC3-208ENST00000560098 POLA1P09884 1462 aaPredicted RBP31.8■■■□□ 2.68
CRTC3-208ENST00000560098 AQRO60306 1485 aaKnown RBP eCLIP31.8■■■□□ 2.68
CRTC3-208ENST00000560098 RIMBP3CA6NJZ7 1639 aa31.76■■■□□ 2.67
CRTC3-208ENST00000560098 RIMBP3BA6NNM3 1639 aa31.76■■■□□ 2.67
CRTC3-208ENST00000560098 RIMBP3Q9UFD9 1639 aa31.76■■■□□ 2.67
CRTC3-208ENST00000560098 RAD54L2Q9Y4B4 1467 aa31.69■■■□□ 2.66
CRTC3-208ENST00000560098 ARHGEF11O15085 1522 aa31.68■■■□□ 2.66
CRTC3-208ENST00000560098 SOGA1O94964 1423 aa31.67■■■□□ 2.66
CRTC3-208ENST00000560098 CHD1O14646 1710 aa31.62■■■□□ 2.65
CRTC3-208ENST00000560098 TDRD9Q8NDG6 1382 aaKnown RBP31.61■■■□□ 2.65
CRTC3-208ENST00000560098 FBLN2P98095 1184 aa31.6■■■□□ 2.65
CRTC3-208ENST00000560098 FGD5Q6ZNL6 1462 aa31.6■■■□□ 2.65
CRTC3-208ENST00000560098 CUX1P39880 1505 aa31.57■■■□□ 2.64
CRTC3-208ENST00000560098 WDR97A6NE52 1622 aa31.52■■■□□ 2.64
CRTC3-208ENST00000560098 SNAPC4Q5SXM2 1469 aa31.47■■■□□ 2.63
CRTC3-208ENST00000560098 SUPT5HO00267 1087 aaKnown RBP31.47■■■□□ 2.63
CRTC3-208ENST00000560098 CYB5RLQ6IPT4 315 aa31.47■■■□□ 2.63
CRTC3-208ENST00000560098 GRIN2BQ13224 1484 aa31.39■■■□□ 2.62
CRTC3-208ENST00000560098 MAGI1Q96QZ7 1491 aaPredicted RBP31.39■■■□□ 2.62
CRTC3-208ENST00000560098 CHMP7Q8WUX9 453 aaPredicted RBP31.38■■■□□ 2.61
CRTC3-208ENST00000560098 ARAP1Q96P48 1450 aa31.36■■■□□ 2.61
CRTC3-208ENST00000560098 CLASP1Q7Z460 1538 aa31.3■■■□□ 2.6
CRTC3-208ENST00000560098 SYNJ2O15056 1496 aa31.29■■■□□ 2.6
CRTC3-208ENST00000560098 GAPVD1Q14C86 1478 aa31.28■■■□□ 2.6
CRTC3-208ENST00000560098 SYNJ1O43426 1573 aa31.28■■■□□ 2.6
CRTC3-208ENST00000560098 ABCA10Q8WWZ4 1543 aa31.25■■■□□ 2.59
CRTC3-208ENST00000560098 PBRM1Q86U86 1689 aa31.21■■■□□ 2.59
CRTC3-208ENST00000560098 ABCA5Q8WWZ7 1642 aa31.18■■■□□ 2.58
CRTC3-208ENST00000560098 WRNQ14191 1432 aaPredicted RBP eCLIP31.14■■■□□ 2.58
CRTC3-208ENST00000560098 TRHP20396 242 aaPredicted RBP31.12■■■□□ 2.57
CRTC3-208ENST00000560098 TOP2BQ02880 1626 aa31.06■■■□□ 2.56
CRTC3-208ENST00000560098 BIVM-ERCC5R4GMW8 1640 aa31.05■■■□□ 2.56
CRTC3-208ENST00000560098 GRIN2AQ12879 1464 aa30.98■■■□□ 2.55
CRTC3-208ENST00000560098 ADAMTS12P58397 1594 aa30.95■■■□□ 2.55
CRTC3-208ENST00000560098 FHAD1B1AJZ9 1412 aa30.89■■■□□ 2.54
CRTC3-208ENST00000560098 NUP160Q12769 1436 aa30.89■■■□□ 2.53
CRTC3-208ENST00000560098 ERICH3Q5RHP9 1530 aa30.86■■■□□ 2.53
CRTC3-208ENST00000560098 CEP170Q5SW79 1584 aa30.86■■■□□ 2.53
CRTC3-208ENST00000560098 ERCC6L2Q5T890 1561 aa30.8■■■□□ 2.52
CRTC3-208ENST00000560098 SHROOM2Q13796 1616 aa30.73■■■□□ 2.51
CRTC3-208ENST00000560098 JPH4Q96JJ6 628 aa30.59■■■□□ 2.49
CRTC3-208ENST00000560098 PRG4Q92954 1404 aaPredicted RBP30.59■■■□□ 2.49
CRTC3-208ENST00000560098 RUSC2Q8N2Y8 1516 aa30.51■■■□□ 2.48
CRTC3-208ENST00000560098 KIF27Q86VH2 1401 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms