Protein–RNA interactions for Protein: Q969K7

TMEM54, Transmembrane protein 54, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM54Q969K7 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 AJ011931.1-201ENST00000618749 2492 ntBASIC13.53□□□□□ -0.24
TMEM54Q969K7 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 HLA-K-203ENST00000430151 1046 ntBASIC13.53□□□□□ -0.24
TMEM54Q969K7 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 SPDYE22P-201ENST00000582158 798 ntBASIC13.53□□□□□ -0.24
TMEM54Q969K7 CTBP2P3-201ENST00000585629 1255 ntBASIC13.53□□□□□ -0.24
TMEM54Q969K7 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.53□□□□□ -0.24
TMEM54Q969K7 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TMEM54Q969K7 LINC01101-201ENST00000622953 1884 ntBASIC13.53□□□□□ -0.24
TMEM54Q969K7 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.52□□□□□ -0.24
TMEM54Q969K7 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
TMEM54Q969K7 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TMEM54Q969K7 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TMEM54Q969K7 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
TMEM54Q969K7 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
TMEM54Q969K7 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
TMEM54Q969K7 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 AC092364.2-202ENST00000597012 1073 ntBASIC13.52□□□□□ -0.25
TMEM54Q969K7 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 AC013726.1-201ENST00000563747 2285 ntBASIC13.52□□□□□ -0.25
TMEM54Q969K7 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
TMEM54Q969K7 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.52□□□□□ -0.25
TMEM54Q969K7 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TMEM54Q969K7 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TMEM54Q969K7 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
TMEM54Q969K7 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
TMEM54Q969K7 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
TMEM54Q969K7 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
TMEM54Q969K7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms