Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 MYCLP2-201ENST00000449268 967 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 RN7SL399P-201ENST00000471648 279 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 MIR4313-201ENST00000580760 101 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 CTBP2P3-201ENST00000585629 1255 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 MIR8072-201ENST00000614241 80 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 AC018892.3-201ENST00000623986 2499 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF43Q68DV7 LINC00528-201ENST00000600723 2160 ntBASIC16.19■□□□□ 0.18
RNF43Q68DV7 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF43Q68DV7 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 CLK3P2-201ENST00000427566 1453 ntBASIC16.18■□□□□ 0.18
RNF43Q68DV7 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.18■□□□□ 0.18
RNF43Q68DV7 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF43Q68DV7 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
RNF43Q68DV7 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms