Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 DGCR9-201ENST00000609630 2415 ntBASIC11.66□□□□□ -0.54
FOXA3P55318 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC11.65□□□□□ -0.54
FOXA3P55318 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC11.65□□□□□ -0.54
FOXA3P55318 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.54
FOXA3P55318 AC073621.1-201ENST00000392730 636 ntBASIC11.65□□□□□ -0.54
FOXA3P55318 AC004987.2-201ENST00000395959 1148 ntBASIC11.65□□□□□ -0.54
FOXA3P55318 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC11.65□□□□□ -0.54
FOXA3P55318 PCED1CP-201ENST00000419887 785 ntBASIC11.65□□□□□ -0.54
FOXA3P55318 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 FIS1-203ENST00000442303 631 ntTSL 3 BASIC11.65□□□□□ -0.54
FOXA3P55318 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC11.65□□□□□ -0.54
FOXA3P55318 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC11.65□□□□□ -0.54
FOXA3P55318 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC11.65□□□□□ -0.54
FOXA3P55318 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
FOXA3P55318 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC11.65□□□□□ -0.54
FOXA3P55318 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
FOXA3P55318 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
FOXA3P55318 AC099521.3-201ENST00000624251 2938 ntBASIC11.65□□□□□ -0.54
FOXA3P55318 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
FOXA3P55318 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
FOXA3P55318 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
FOXA3P55318 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
FOXA3P55318 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.65□□□□□ -0.55
FOXA3P55318 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
FOXA3P55318 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
FOXA3P55318 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
FOXA3P55318 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
FOXA3P55318 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.55
FOXA3P55318 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
FOXA3P55318 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.65□□□□□ -0.55
FOXA3P55318 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 AC089987.1-201ENST00000551654 2209 ntBASIC11.64□□□□□ -0.55
FOXA3P55318 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 PMS2P7-201ENST00000506558 1336 ntBASIC11.64□□□□□ -0.55
FOXA3P55318 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
FOXA3P55318 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC11.64□□□□□ -0.55
FOXA3P55318 SCARNA2-201ENST00000458748 420 ntBASIC11.64□□□□□ -0.55
FOXA3P55318 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms