Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.35■□□□□ 0.21
LIG3P49916 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
LIG3P49916 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
LIG3P49916 MIR770-201ENST00000390219 98 ntBASIC16.35■□□□□ 0.21
LIG3P49916 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.35■□□□□ 0.21
LIG3P49916 AC107890.1-201ENST00000422478 521 ntBASIC16.35■□□□□ 0.21
LIG3P49916 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.35■□□□□ 0.21
LIG3P49916 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.35■□□□□ 0.21
LIG3P49916 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.35■□□□□ 0.21
LIG3P49916 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.35■□□□□ 0.21
LIG3P49916 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
LIG3P49916 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.35■□□□□ 0.21
LIG3P49916 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.35■□□□□ 0.21
LIG3P49916 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIG3P49916 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
LIG3P49916 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.34■□□□□ 0.21
LIG3P49916 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LIG3P49916 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.34■□□□□ 0.21
LIG3P49916 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.34■□□□□ 0.21
LIG3P49916 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LIG3P49916 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.34■□□□□ 0.21
LIG3P49916 MIR943-201ENST00000401286 94 ntBASIC16.34■□□□□ 0.21
LIG3P49916 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.34■□□□□ 0.21
LIG3P49916 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.34■□□□□ 0.21
LIG3P49916 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.34■□□□□ 0.21
LIG3P49916 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.34■□□□□ 0.21
LIG3P49916 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.34■□□□□ 0.21
LIG3P49916 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
LIG3P49916 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.34■□□□□ 0.21
LIG3P49916 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.34■□□□□ 0.21
LIG3P49916 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIG3P49916 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
LIG3P49916 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.33■□□□□ 0.21
LIG3P49916 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.33■□□□□ 0.21
LIG3P49916 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
LIG3P49916 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
LIG3P49916 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LIG3P49916 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.33■□□□□ 0.2
LIG3P49916 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.33■□□□□ 0.2
LIG3P49916 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms