RNA–Protein interactions for RNA: ENST00000369604.5

PHTF1-204, Transcript of putative homeodomain transcription factor 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PHTF1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-204ENST00000369604 NISCHQ9Y2I1 1504 aa27.05■■□□□ 1.92
PHTF1-204ENST00000369604 SHROOM4Q9ULL8 1493 aa24.25■■□□□ 1.47
PHTF1-204ENST00000369604 SUPT5HO00267 1087 aaKnown RBP24.2■■□□□ 1.46
PHTF1-204ENST00000369604 HRCP23327 699 aa24.18■■□□□ 1.46
PHTF1-204ENST00000369604 PCGF6Q9BYE7 350 aa23.89■■□□□ 1.41
PHTF1-204ENST00000369604 PPARGC1BQ86YN6 1023 aaKnown RBP23.78■■□□□ 1.4
PHTF1-204ENST00000369604 CHIC1Q5VXU3 224 aa23.59■■□□□ 1.37
PHTF1-204ENST00000369604 MYO15BQ96JP2 1530 aa23.58■■□□□ 1.37
PHTF1-204ENST00000369604 DCAF8L2P0C7V8 631 aa23.43■■□□□ 1.34
PHTF1-204ENST00000369604 PELP1Q8IZL8 1130 aaKnown RBP23.23■■□□□ 1.31
PHTF1-204ENST00000369604 LOC105371045A0A1W2PR82 267 aa23.14■■□□□ 1.3
PHTF1-204ENST00000369604 DCAF1Q9Y4B6 1507 aa23.04■■□□□ 1.28
PHTF1-204ENST00000369604 TRIM26Q12899 539 aaPredicted RBP23.04■■□□□ 1.28
PHTF1-204ENST00000369604 ZCCHC6Q5VYS8 1495 aaKnown RBP22.96■■□□□ 1.27
PHTF1-204ENST00000369604 ZEB1P37275 1124 aaPredicted RBP22.84■■□□□ 1.25
PHTF1-204ENST00000369604 SCAF1Q9H7N4 1312 aaKnown RBP22.84■■□□□ 1.25
PHTF1-204ENST00000369604 CCDC180Q9P1Z9 1646 aa22.69■■□□□ 1.22
PHTF1-204ENST00000369604 FAM9AQ8IZU1 332 aaPredicted RBP22.43■■□□□ 1.18
PHTF1-204ENST00000369604 EHMT2Q96KQ7 1210 aa22.43■■□□□ 1.18
PHTF1-204ENST00000369604 ACIN1Q9UKV3 1341 aaKnown RBP22.34■■□□□ 1.17
PHTF1-204ENST00000369604 TRIM41Q8WV44 630 aa22.33■■□□□ 1.17
PHTF1-204ENST00000369604 MYT1Q01538 1121 aa22.29■■□□□ 1.16
PHTF1-204ENST00000369604 NEUROD1Q13562 356 aa22.29■■□□□ 1.16
PHTF1-204ENST00000369604 GTF3C3Q9Y5Q9 886 aa22.22■■□□□ 1.15
PHTF1-204ENST00000369604 CENPBP07199 599 aaPredicted RBP22.18■■□□□ 1.14
PHTF1-204ENST00000369604 CCER1Q8TC90 406 aaPredicted RBP22.17■■□□□ 1.14
PHTF1-204ENST00000369604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
PHTF1-204ENST00000369604 DIEXFQ68CQ4 756 aaKnown RBP22.08■■□□□ 1.12
PHTF1-204ENST00000369604 TTBK1Q5TCY1 1321 aaPredicted RBP21.86■■□□□ 1.09
PHTF1-204ENST00000369604 ABCC9O60706 1549 aa21.85■■□□□ 1.09
PHTF1-204ENST00000369604 YTHDC1Q96MU7 727 aaKnown RBP21.85■■□□□ 1.09
PHTF1-204ENST00000369604 RSF1Q96T23 1441 aaPredicted RBP21.82■■□□□ 1.08
PHTF1-204ENST00000369604 RB1CC1Q8TDY2 1594 aa21.68■■□□□ 1.06
PHTF1-204ENST00000369604 ZNF316A6NFI3 1004 aaPredicted RBP21.63■■□□□ 1.05
PHTF1-204ENST00000369604 SCRIBQ14160 1630 aa21.53■■□□□ 1.04
PHTF1-204ENST00000369604 MIER1Q8N108 512 aa21.49■■□□□ 1.03
PHTF1-204ENST00000369604 HNRNPUL2Q1KMD3 747 aaKnown RBP21.3■■□□□ 1
PHTF1-204ENST00000369604 UBTFP17480 764 aaKnown RBP21.27■■□□□ 1
PHTF1-204ENST00000369604 CEP162Q5TB80 1403 aa21.25■□□□□ 0.99
PHTF1-204ENST00000369604 CECR2Q9BXF3 1484 aa21.24■□□□□ 0.99
PHTF1-204ENST00000369604 WRNQ14191 1432 aaPredicted RBP eCLIP21.22■□□□□ 0.99
PHTF1-204ENST00000369604 MROH2BQ7Z745 1585 aa21.17■□□□□ 0.98
PHTF1-204ENST00000369604 NACADO15069 1562 aa21.12■□□□□ 0.97
PHTF1-204ENST00000369604 SUPT16HQ9Y5B9 1047 aaKnown RBP21.1■□□□□ 0.97
PHTF1-204ENST00000369604 WIZO95785 1651 aa21.08■□□□□ 0.97
PHTF1-204ENST00000369604 TNIKQ9UKE5 1360 aa21.08■□□□□ 0.96
PHTF1-204ENST00000369604 CSRNP3Q8WYN3 585 aa21.05■□□□□ 0.96
PHTF1-204ENST00000369604 CCDC88BA6NC98 1476 aa21.05■□□□□ 0.96
PHTF1-204ENST00000369604 PABPN1Q86U42 306 aaKnown RBP eCLIP21.02■□□□□ 0.96
PHTF1-204ENST00000369604 SOGA1O94964 1423 aa21.02■□□□□ 0.96
PHTF1-204ENST00000369604 ABCC8Q09428 1581 aa21.01■□□□□ 0.95
PHTF1-204ENST00000369604 ANP32EQ9BTT0 268 aa21■□□□□ 0.95
PHTF1-204ENST00000369604 CLSPNQ9HAW4 1339 aa21■□□□□ 0.95
PHTF1-204ENST00000369604 APLP2Q06481 763 aa20.98■□□□□ 0.95
PHTF1-204ENST00000369604 TSHZ2Q9NRE2 1034 aa20.98■□□□□ 0.95
PHTF1-204ENST00000369604 RANGAP1P46060 587 aaPredicted RBP20.91■□□□□ 0.94
PHTF1-204ENST00000369604 BCL11AQ9H165 835 aa20.9■□□□□ 0.94
PHTF1-204ENST00000369604 RUSC2Q8N2Y8 1516 aa20.86■□□□□ 0.93
PHTF1-204ENST00000369604 BCANQ96GW7 911 aa20.86■□□□□ 0.93
PHTF1-204ENST00000369604 BAZ1AQ9NRL2 1556 aaPredicted RBP20.85■□□□□ 0.93
PHTF1-204ENST00000369604 EIF4G1Q04637 1599 aaKnown RBP20.83■□□□□ 0.92
PHTF1-204ENST00000369604 GOLGA3Q08378 1498 aa20.82■□□□□ 0.92
PHTF1-204ENST00000369604 EEA1Q15075 1411 aa20.81■□□□□ 0.92
PHTF1-204ENST00000369604 CLIP1P30622 1438 aa20.73■□□□□ 0.91
PHTF1-204ENST00000369604 FKBP8Q14318 412 aa20.68■□□□□ 0.9
PHTF1-204ENST00000369604 KCNH8Q96L42 1107 aa20.66■□□□□ 0.9
PHTF1-204ENST00000369604 TOP2AP11388 1531 aaKnown RBP20.64■□□□□ 0.89
PHTF1-204ENST00000369604 VPS8Q8N3P4 1428 aa20.63■□□□□ 0.89
PHTF1-204ENST00000369604 DHX57Q6P158 1386 aaKnown RBP20.63■□□□□ 0.89
PHTF1-204ENST00000369604 CEP164Q9UPV0 1460 aa20.61■□□□□ 0.89
PHTF1-204ENST00000369604 NEFLP07196 543 aa20.59■□□□□ 0.89
PHTF1-204ENST00000369604 UNC13AQ9UPW8 1703 aa20.59■□□□□ 0.89
PHTF1-204ENST00000369604 SMARCA2P51531 1590 aa20.58■□□□□ 0.88
PHTF1-204ENST00000369604 ITGAEP38570 1179 aa20.54■□□□□ 0.88
PHTF1-204ENST00000369604 RBM19Q9Y4C8 960 aaKnown RBP20.54■□□□□ 0.88
PHTF1-204ENST00000369604 DDX10Q13206 875 aaKnown RBP20.47■□□□□ 0.87
PHTF1-204ENST00000369604 BICRAQ9NZM4 1560 aa20.45■□□□□ 0.86
PHTF1-204ENST00000369604 KANK4Q5T7N3 995 aaPredicted RBP20.42■□□□□ 0.86
PHTF1-204ENST00000369604 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
PHTF1-204ENST00000369604 TRIM52Q96A61 297 aa20.41■□□□□ 0.86
PHTF1-204ENST00000369604 SMARCA4P51532 1647 aa20.41■□□□□ 0.86
PHTF1-204ENST00000369604 KIF21BO75037 1637 aa20.39■□□□□ 0.86
PHTF1-204ENST00000369604 ERICH6Q7L0X2 663 aa20.38■□□□□ 0.85
PHTF1-204ENST00000369604 BAZ1BQ9UIG0 1483 aaKnown RBP20.33■□□□□ 0.85
PHTF1-204ENST00000369604 HIRIP3Q9BW71 556 aaPredicted RBP20.29■□□□□ 0.84
PHTF1-204ENST00000369604 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
PHTF1-204ENST00000369604 MSH5O43196 834 aa20.26■□□□□ 0.83
PHTF1-204ENST00000369604 ANP32CO43423 234 aa20.26■□□□□ 0.83
PHTF1-204ENST00000369604 CCNB3Q8WWL7 1395 aa20.24■□□□□ 0.83
PHTF1-204ENST00000369604 SIN3AQ96ST3 1273 aa20.22■□□□□ 0.83
PHTF1-204ENST00000369604 CDK11AQ9UQ88 783 aaPredicted RBP20.21■□□□□ 0.83
PHTF1-204ENST00000369604 RAB3GAP2Q9H2M9 1393 aa20.19■□□□□ 0.82
PHTF1-204ENST00000369604 IRX6P78412 446 aaPredicted RBP20.19■□□□□ 0.82
PHTF1-204ENST00000369604 RRBP1Q9P2E9 1410 aaKnown RBP20.18■□□□□ 0.82
PHTF1-204ENST00000369604 PPP1R15AO75807 674 aaPredicted RBP20.15■□□□□ 0.82
PHTF1-204ENST00000369604 ARAP1Q96P48 1450 aa20.14■□□□□ 0.82
PHTF1-204ENST00000369604 CCER2I3L3R5 266 aa20.14■□□□□ 0.82
PHTF1-204ENST00000369604 FAM50AQ14320 339 aaKnown RBP20.1■□□□□ 0.81
PHTF1-204ENST00000369604 FANCIQ9NVI1 1328 aa20.09■□□□□ 0.81
PHTF1-204ENST00000369604 HNRNPUQ00839 825 aaKnown RBP eCLIP20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms