Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DDX39A-206ENST00000587730 1813 ntTSL 1 (best)19.31■□□□□ 0.682e-7■□□□□ 10
YBX3P16989 DDX39A-208ENST00000588692 1478 ntTSL 519.14■□□□□ 0.652e-7■□□□□ 10
YBX3P16989 DDX39A-217ENST00000592391 1080 ntTSL 518.93■□□□□ 0.622e-7■□□□□ 10
YBX3P16989 DDX39A-209ENST00000589318 1903 ntTSL 1 (best)17.53■□□□□ 0.42e-7■□□□□ 10
YBX3P16989 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.193e-7■□□□□ 10
YBX3P16989 DDX39A-219ENST00000592927 823 ntTSL 316.2■□□□□ 0.182e-7■□□□□ 10
YBX3P16989 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.11■□□□□ 0.173e-7■□□□□ 10
YBX3P16989 DDX39A-202ENST00000324340 1355 ntTSL 1 (best)15.01□□□□□ -0.012e-7■□□□□ 10
YBX3P16989 PXN-218ENST00000551327 588 ntTSL 412.22□□□□□ -0.451e-7■□□□□ 10
YBX3P16989 RNF114-208ENST00000625177 580 ntTSL 331.98■■■□□ 2.712e-10■□□□□ 10
YBX3P16989 RNF114-205ENST00000623732 569 ntTSL 531.16■■■□□ 2.582e-10■□□□□ 10
YBX3P16989 RNF114-204ENST00000623528 624 ntTSL 325.51■■□□□ 1.672e-10■□□□□ 10
YBX3P16989 RNF114-207ENST00000624666 2006 ntTSL 212.59□□□□□ -0.392e-10■□□□□ 10
YBX3P16989 CDK16-215ENST00000520295 573 ntTSL 420.43■□□□□ 0.864e-7■□□□□ 10
YBX3P16989 VIM-202ENST00000421459 753 ntTSL 211.35□□□□□ -0.594e-7■□□□□ 10
YBX3P16989 VIM-207ENST00000495528 962 ntTSL 28.83□□□□□ -14e-7■□□□□ 10
YBX3P16989 VIM-210ENST00000637053 508 ntTSL 24.47□□□□□ -1.694e-7■□□□□ 10
YBX3P16989 ITGA5-211ENST00000552564 4996 ntTSL 214.23□□□□□ -0.132e-6■□□□□ 10
YBX3P16989 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.282e-6■□□□□ 10
YBX3P16989 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.283e-6■□□□□ 10
YBX3P16989 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.13■□□□□ 0.173e-6■□□□□ 10
YBX3P16989 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.143e-6■□□□□ 10
YBX3P16989 GRB2-204ENST00000392563 2851 ntTSL 1 (best) BASIC10.95□□□□□ -0.663e-6■□□□□ 10
YBX3P16989 GRB2-205ENST00000392564 3182 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.733e-6■□□□□ 10
YBX3P16989 GRB2-209ENST00000581959 359 ntTSL 38.01□□□□□ -1.133e-6■□□□□ 10
YBX3P16989 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.163e-6■□□□□ 10
YBX3P16989 MRFAP1L1-202ENST00000500563 2127 nt14.53□□□□□ -0.083e-6■□□□□ 10
YBX3P16989 WDR83OS-203ENST00000598732 627 ntTSL 214.18□□□□□ -0.142e-11■□□□□ 10
YBX3P16989 WDR83OS-201ENST00000222190 599 ntAPPRIS ALT1 TSL 2 BASIC13.86□□□□□ -0.192e-11■□□□□ 10
YBX3P16989 WDR83OS-202ENST00000596731 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.272e-11■□□□□ 10
YBX3P16989 WDR1-217ENST00000515018 274 ntTSL 311.18□□□□□ -0.622e-11■□□□□ 10
YBX3P16989 COPG1-202ENST00000504350 672 ntTSL 36.44□□□□□ -1.381e-6■□□□□ 10
YBX3P16989 FHL3-203ENST00000477194 1091 ntTSL 244.06■■■■■ 4.645e-9■□□□□ 10
YBX3P16989 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.815e-9■□□□□ 10
YBX3P16989 FHL3-202ENST00000475084 882 ntTSL 525.08■■□□□ 1.615e-9■□□□□ 10
YBX3P16989 FHL3-205ENST00000485803 1468 ntTSL 1 (best)22.11■■□□□ 1.135e-9■□□□□ 10
YBX3P16989 FHL3-204ENST00000483132 607 ntTSL 212.98□□□□□ -0.335e-9■□□□□ 10
YBX3P16989 AP3M1-202ENST00000372745 2320 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.622e-7■□□□□ 10
YBX3P16989 CMPK1-201ENST00000371870 812 ntTSL 225.77■■□□□ 1.723e-22■□□□□ 10
YBX3P16989 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC24.39■■□□□ 1.493e-22■□□□□ 10
YBX3P16989 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.515e-7■□□□□ 10
YBX3P16989 PABPC4-219ENST00000525045 765 ntTSL 219.61■□□□□ 0.735e-10■□□□□ 10
YBX3P16989 PABPC4-220ENST00000525669 582 ntTSL 210.24□□□□□ -0.775e-10■□□□□ 10
YBX3P16989 PABPC4-222ENST00000527718 746 ntTSL 57.11□□□□□ -1.275e-10■□□□□ 10
YBX3P16989 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC17.74■□□□□ 0.431e-39■□□□□ 10
YBX3P16989 EIF4A3-207ENST00000576547 553 ntTSL 324.36■■□□□ 1.494e-8■□□□□ 10
YBX3P16989 EIF4A3-205ENST00000575957 574 ntTSL 223.42■■□□□ 1.344e-8■□□□□ 10
YBX3P16989 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.42e-7■□□□□ 10
YBX3P16989 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC22.92■■□□□ 1.262e-7■□□□□ 10
YBX3P16989 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.322e-7■□□□□ 10
YBX3P16989 NME4-204ENST00000433358 966 ntTSL 331.24■■■□□ 2.596e-11■□□□□ 10
YBX3P16989 NME4-206ENST00000448828 1167 ntTSL 230.29■■■□□ 2.446e-11■□□□□ 10
YBX3P16989 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.336e-11■□□□□ 10
YBX3P16989 NME4-209ENST00000460297 1652 ntTSL 529.09■■■□□ 2.256e-11■□□□□ 10
YBX3P16989 NME4-202ENST00000382940 766 ntTSL 3 BASIC28.77■■■□□ 2.26e-11■□□□□ 10
YBX3P16989 NME4-211ENST00000620944 1193 ntTSL 2 BASIC28.77■■■□□ 2.26e-11■□□□□ 10
YBX3P16989 NME4-205ENST00000444498 1111 ntTSL 324.68■■□□□ 1.546e-11■□□□□ 10
YBX3P16989 NME4-212ENST00000621774 904 ntTSL 3 BASIC24.08■■□□□ 1.456e-11■□□□□ 10
YBX3P16989 NME4-210ENST00000468031 1861 ntTSL 220.35■□□□□ 0.856e-11■□□□□ 10
YBX3P16989 NME4-207ENST00000450036 985 ntTSL 3 BASIC20.24■□□□□ 0.836e-11■□□□□ 10
YBX3P16989 NME4-203ENST00000397722 1232 ntTSL 2 BASIC18.3■□□□□ 0.526e-11■□□□□ 10
YBX3P16989 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.49■■□□□ 1.032e-9■□□□□ 10
YBX3P16989 METTL5-210ENST00000484351 820 ntTSL 210.74□□□□□ -0.691e-9■□□□□ 10
YBX3P16989 METTL5-208ENST00000442181 443 ntTSL 27.51□□□□□ -1.211e-9■□□□□ 10
YBX3P16989 PRR11-207ENST00000582004 232 ntTSL 34.21□□□□□ -1.741e-9■□□□□ 10
YBX3P16989 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.54■□□□□ 0.245e-7■□□□□ 10
YBX3P16989 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.075e-7■□□□□ 10
YBX3P16989 ASH2L-203ENST00000517496 2194 ntTSL 214.97□□□□□ -0.015e-7■□□□□ 10
YBX3P16989 ASH2L-202ENST00000428278 2678 ntTSL 1 (best) BASIC10.53□□□□□ -0.725e-7■□□□□ 10
YBX3P16989 ASH2L-207ENST00000521652 2433 ntTSL 1 (best) BASIC10.5□□□□□ -0.735e-7■□□□□ 10
YBX3P16989 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.042e-18■□□□□ 10
YBX3P16989 LDHB-201ENST00000350669 1303 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.452e-18■□□□□ 10
YBX3P16989 KPNB1-212ENST00000582126 653 ntTSL 517.25■□□□□ 0.352e-8■□□□□ 10
YBX3P16989 SON-217ENST00000478183 1818 ntTSL 1 (best)10.27□□□□□ -0.771e-9■□□□□ 10
YBX3P16989 SON-209ENST00000457208 765 ntTSL 38.69□□□□□ -1.021e-9■□□□□ 10
YBX3P16989 SON-213ENST00000473102 575 ntTSL 57.98□□□□□ -1.131e-9■□□□□ 10
YBX3P16989 SON-210ENST00000465834 957 ntTSL 37.74□□□□□ -1.171e-9■□□□□ 10
YBX3P16989 SON-212ENST00000470533 798 ntTSL 57.41□□□□□ -1.221e-9■□□□□ 10
YBX3P16989 SON-216ENST00000477419 771 ntTSL 26.82□□□□□ -1.321e-9■□□□□ 10
YBX3P16989 SON-219ENST00000491794 995 ntTSL 26.56□□□□□ -1.361e-9■□□□□ 10
YBX3P16989 SON-211ENST00000467616 676 ntTSL 56.53□□□□□ -1.361e-9■□□□□ 10
YBX3P16989 DDX5-205ENST00000577922 996 ntTSL 529.05■■■□□ 2.244e-18■□□□□ 10
YBX3P16989 DDX5-228ENST00000584279 676 ntTSL 329.05■■■□□ 2.244e-18■□□□□ 10
YBX3P16989 DDX5-220ENST00000581806 576 ntTSL 420.7■□□□□ 0.94e-18■□□□□ 10
YBX3P16989 DDX5-219ENST00000581697 580 ntTSL 519.9■□□□□ 0.784e-18■□□□□ 10
YBX3P16989 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.6■□□□□ 0.574e-18■□□□□ 10
YBX3P16989 DDX5-232ENST00000585111 1051 ntTSL 218.3■□□□□ 0.524e-18■□□□□ 10
YBX3P16989 DDX5-207ENST00000578400 575 ntTSL 517.32■□□□□ 0.364e-18■□□□□ 10
YBX3P16989 DDX5-233ENST00000585223 699 ntTSL 214.18□□□□□ -0.144e-18■□□□□ 10
YBX3P16989 DLEU1-220ENST00000478860 602 ntTSL 1 (best) BASIC12.61□□□□□ -0.391e-9■□□□□ 10
YBX3P16989 DDX5-231ENST00000585060 572 ntTSL 411.7□□□□□ -0.544e-18■□□□□ 10
YBX3P16989 DLEU1_1.1-201ENST00000618107 190 ntBASIC6.78□□□□□ -1.321e-9■□□□□ 10
YBX3P16989 PTTG1-203ENST00000517480 684 ntTSL 59.19□□□□□ -0.941e-18■□□□□ 10
YBX3P16989 PTTG1-207ENST00000524244 434 ntTSL 28.51□□□□□ -1.051e-18■□□□□ 10
YBX3P16989 PTTG1-206ENST00000523659 851 ntTSL 26.72□□□□□ -1.331e-18■□□□□ 10
YBX3P16989 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.766e-8■□□□□ 10
YBX3P16989 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.536e-8■□□□□ 10
YBX3P16989 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC23.45■■□□□ 1.346e-8■□□□□ 10
YBX3P16989 REXO2-213ENST00000543131 539 ntTSL 323.25■■□□□ 1.316e-8■□□□□ 10
YBX3P16989 REXO2-205ENST00000539119 664 ntTSL 320.84■□□□□ 0.936e-8■□□□□ 10
Retrieved 100 of 29,075 protein–RNA pairs in 259.5 ms