RNA–Protein interactions for RNA: ENST00000592391.5

DDX39A-217, Transcript of DExD-box helicase 39A, humanhuman

TSL 5

Gene DDX39A, Length 1,080 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-217ENST00000592391 NISCHQ9Y2I1 1504 aa35.44■■■■□ 3.26
DDX39A-217ENST00000592391 CCDC180Q9P1Z9 1646 aa31.53■■■□□ 2.64
DDX39A-217ENST00000592391 ABCC9O60706 1549 aa30.95■■■□□ 2.55
DDX39A-217ENST00000592391 RB1CC1Q8TDY2 1594 aa29.73■■■□□ 2.35
DDX39A-217ENST00000592391 NACADO15069 1562 aa29.69■■■□□ 2.34
DDX39A-217ENST00000592391 DCAF8L2P0C7V8 631 aa29.64■■■□□ 2.34
DDX39A-217ENST00000592391 ZCCHC6Q5VYS8 1495 aaKnown RBP29.51■■■□□ 2.31
DDX39A-217ENST00000592391 MYO15BQ96JP2 1530 aa29.5■■■□□ 2.31
DDX39A-217ENST00000592391 DCAF1Q9Y4B6 1507 aa29.34■■■□□ 2.29
DDX39A-217ENST00000592391 UNC13AQ9UPW8 1703 aa29.01■■■□□ 2.23
DDX39A-217ENST00000592391 PABPN1Q86U42 306 aaKnown RBP eCLIP28.92■■■□□ 2.22
DDX39A-217ENST00000592391 BICRAQ9NZM4 1560 aa28.84■■■□□ 2.21
DDX39A-217ENST00000592391 SCRIBQ14160 1630 aa28.76■■■□□ 2.19
DDX39A-217ENST00000592391 SHROOM4Q9ULL8 1493 aa28.56■■■□□ 2.16
DDX39A-217ENST00000592391 DNAJC5BQ9UF47 199 aa28.51■■■□□ 2.15
DDX39A-217ENST00000592391 EIF4G1Q04637 1599 aaKnown RBP28.09■■■□□ 2.09
DDX39A-217ENST00000592391 CC2D2AQ9P2K1 1620 aa27.99■■■□□ 2.07
DDX39A-217ENST00000592391 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.05
DDX39A-217ENST00000592391 SMARCA4P51532 1647 aa27.51■■□□□ 1.99
DDX39A-217ENST00000592391 BAZ1AQ9NRL2 1556 aaPredicted RBP27.48■■□□□ 1.99
DDX39A-217ENST00000592391 NCAPD3P42695 1498 aa27.41■■□□□ 1.98
DDX39A-217ENST00000592391 ATAD2BQ9ULI0 1458 aa27.4■■□□□ 1.98
DDX39A-217ENST00000592391 SMARCA2P51531 1590 aa27.36■■□□□ 1.97
DDX39A-217ENST00000592391 MROH2BQ7Z745 1585 aa27.31■■□□□ 1.96
DDX39A-217ENST00000592391 PEG3Q9GZU2 1588 aa27.26■■□□□ 1.96
DDX39A-217ENST00000592391 HMGXB3Q12766 1538 aa27.26■■□□□ 1.95
DDX39A-217ENST00000592391 BAZ1BQ9UIG0 1483 aaKnown RBP27.17■■□□□ 1.94
DDX39A-217ENST00000592391 WIZO95785 1651 aa26.99■■□□□ 1.91
DDX39A-217ENST00000592391 RSF1Q96T23 1441 aaPredicted RBP26.98■■□□□ 1.91
DDX39A-217ENST00000592391 NESP48681 1621 aa26.76■■□□□ 1.87
DDX39A-217ENST00000592391 TOP2AP11388 1531 aaKnown RBP26.72■■□□□ 1.87
DDX39A-217ENST00000592391 ERCC6Q03468 1493 aa26.69■■□□□ 1.86
DDX39A-217ENST00000592391 LAMC3Q9Y6N6 1575 aa26.68■■□□□ 1.86
DDX39A-217ENST00000592391 CADPSQ9ULU8 1353 aa26.6■■□□□ 1.85
DDX39A-217ENST00000592391 PDS5BQ9NTI5 1447 aa26.52■■□□□ 1.84
DDX39A-217ENST00000592391 CUX2O14529 1486 aa26.46■■□□□ 1.83
DDX39A-217ENST00000592391 CFTRP13569 1480 aa26.42■■□□□ 1.82
DDX39A-217ENST00000592391 CCDC88BA6NC98 1476 aa26.41■■□□□ 1.82
DDX39A-217ENST00000592391 KIF21AQ7Z4S6 1674 aa26.41■■□□□ 1.82
DDX39A-217ENST00000592391 THOC2Q8NI27 1593 aaKnown RBP26.37■■□□□ 1.81
DDX39A-217ENST00000592391 FANCD2Q9BXW9 1451 aa26.3■■□□□ 1.8
DDX39A-217ENST00000592391 CEP164Q9UPV0 1460 aa26.26■■□□□ 1.79
DDX39A-217ENST00000592391 MRC2Q9UBG0 1479 aa26.25■■□□□ 1.79
DDX39A-217ENST00000592391 SUPT5HO00267 1087 aaKnown RBP26.21■■□□□ 1.79
DDX39A-217ENST00000592391 WDR62O43379 1518 aa26.16■■□□□ 1.78
DDX39A-217ENST00000592391 PRDM2Q13029 1718 aa26.16■■□□□ 1.78
DDX39A-217ENST00000592391 URB2Q14146 1524 aaKnown RBP26.04■■□□□ 1.76
DDX39A-217ENST00000592391 TOPBP1Q92547 1522 aa25.86■■□□□ 1.73
DDX39A-217ENST00000592391 ABCC8Q09428 1581 aa25.86■■□□□ 1.73
DDX39A-217ENST00000592391 DNMBPQ6XZF7 1577 aa25.81■■□□□ 1.72
DDX39A-217ENST00000592391 DNAJC5Q9H3Z4 198 aa25.76■■□□□ 1.71
DDX39A-217ENST00000592391 IFT140Q96RY7 1462 aa25.72■■□□□ 1.71
DDX39A-217ENST00000592391 POLA1P09884 1462 aaPredicted RBP25.64■■□□□ 1.69
DDX39A-217ENST00000592391 CUX1P39880 1505 aa25.63■■□□□ 1.69
DDX39A-217ENST00000592391 ZNF608Q9ULD9 1512 aaPredicted RBP25.61■■□□□ 1.69
DDX39A-217ENST00000592391 TARBP1Q13395 1621 aaKnown RBP25.57■■□□□ 1.68
DDX39A-217ENST00000592391 FGD5Q6ZNL6 1462 aa25.55■■□□□ 1.68
DDX39A-217ENST00000592391 SOGA1O94964 1423 aa25.54■■□□□ 1.68
DDX39A-217ENST00000592391 RAD54L2Q9Y4B4 1467 aa25.52■■□□□ 1.68
DDX39A-217ENST00000592391 EIF4G3O43432 1585 aaKnown RBP25.49■■□□□ 1.67
DDX39A-217ENST00000592391 AQRO60306 1485 aaKnown RBP eCLIP25.45■■□□□ 1.661e-8■■■■□ 21.9
DDX39A-217ENST00000592391 WRNQ14191 1432 aaPredicted RBP eCLIP25.44■■□□□ 1.662e-9■■■■■ 39.4
DDX39A-217ENST00000592391 TDRD9Q8NDG6 1382 aaKnown RBP25.4■■□□□ 1.66
DDX39A-217ENST00000592391 WDR97A6NE52 1622 aa25.38■■□□□ 1.65
DDX39A-217ENST00000592391 TOP2BQ02880 1626 aa25.37■■□□□ 1.65
DDX39A-217ENST00000592391 BIVM-ERCC5R4GMW8 1640 aa25.37■■□□□ 1.65
DDX39A-217ENST00000592391 SYNJ1O43426 1573 aa25.36■■□□□ 1.65
DDX39A-217ENST00000592391 OSCARQ8IYS5 282 aa25.35■■□□□ 1.65
DDX39A-217ENST00000592391 ABCA10Q8WWZ4 1543 aa25.31■■□□□ 1.64
DDX39A-217ENST00000592391 GRIN2BQ13224 1484 aa25.25■■□□□ 1.63
DDX39A-217ENST00000592391 GAPVD1Q14C86 1478 aa25.23■■□□□ 1.63
DDX39A-217ENST00000592391 SNAPC4Q5SXM2 1469 aa25.21■■□□□ 1.63
DDX39A-217ENST00000592391 ABCA5Q8WWZ7 1642 aa25.2■■□□□ 1.62
DDX39A-217ENST00000592391 MAGI1Q96QZ7 1491 aaPredicted RBP25.19■■□□□ 1.62
DDX39A-217ENST00000592391 CHD1O14646 1710 aa25.16■■□□□ 1.62
DDX39A-217ENST00000592391 FBLN2P98095 1184 aa25.16■■□□□ 1.62
DDX39A-217ENST00000592391 PBRM1Q86U86 1689 aa25.14■■□□□ 1.62
DDX39A-217ENST00000592391 SYNJ2O15056 1496 aa25.09■■□□□ 1.61
DDX39A-217ENST00000592391 CHMP7Q8WUX9 453 aaPredicted RBP25.09■■□□□ 1.61
DDX39A-217ENST00000592391 ERICH3Q5RHP9 1530 aa25.01■■□□□ 1.59
DDX39A-217ENST00000592391 ADAMTS12P58397 1594 aa24.97■■□□□ 1.59
DDX39A-217ENST00000592391 FHAD1B1AJZ9 1412 aa24.95■■□□□ 1.58
DDX39A-217ENST00000592391 CLASP1Q7Z460 1538 aa24.93■■□□□ 1.58
DDX39A-217ENST00000592391 ARHGEF11O15085 1522 aa24.92■■□□□ 1.58
DDX39A-217ENST00000592391 GRIN2AQ12879 1464 aa24.92■■□□□ 1.58
DDX39A-217ENST00000592391 RIMBP3CA6NJZ7 1639 aa24.92■■□□□ 1.58
DDX39A-217ENST00000592391 RIMBP3BA6NNM3 1639 aa24.92■■□□□ 1.58
DDX39A-217ENST00000592391 RIMBP3Q9UFD9 1639 aa24.92■■□□□ 1.58
DDX39A-217ENST00000592391 KIF27Q86VH2 1401 aa24.92■■□□□ 1.58
DDX39A-217ENST00000592391 TRIM41Q8WV44 630 aa24.86■■□□□ 1.57
DDX39A-217ENST00000592391 IGF1RP08069 1367 aa24.83■■□□□ 1.57
DDX39A-217ENST00000592391 NUP160Q12769 1436 aa24.82■■□□□ 1.56
DDX39A-217ENST00000592391 CEP170Q5SW79 1584 aa24.79■■□□□ 1.56
DDX39A-217ENST00000592391 CUL7Q14999 1698 aa24.74■■□□□ 1.55
DDX39A-217ENST00000592391 ARAP1Q96P48 1450 aa24.72■■□□□ 1.55
DDX39A-217ENST00000592391 CYB5RLQ6IPT4 315 aa24.7■■□□□ 1.54
DDX39A-217ENST00000592391 CARMIL1Q5VZK9 1371 aa24.67■■□□□ 1.54
DDX39A-217ENST00000592391 RUSC2Q8N2Y8 1516 aa24.65■■□□□ 1.54
DDX39A-217ENST00000592391 SHROOM2Q13796 1616 aa24.62■■□□□ 1.53
DDX39A-217ENST00000592391 ERCC6L2Q5T890 1561 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms