RNA–Protein interactions for RNA: ENST00000350669.5

LDHB-201, Transcript of lactate dehydrogenase B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDHB, Length 1,303 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHB-201ENST00000350669 AEBP2Q6ZN18 517 aaPredicted RBP23.85■■□□□ 1.41
LDHB-201ENST00000350669 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
LDHB-201ENST00000350669 NISCHQ9Y2I1 1504 aa21.33■■□□□ 1
LDHB-201ENST00000350669 PHF23Q9BUL5 403 aaPredicted RBP20.34■□□□□ 0.85
LDHB-201ENST00000350669 SENP3Q9H4L4 574 aaPredicted RBP20.2■□□□□ 0.82
LDHB-201ENST00000350669 ABCC9O60706 1549 aa20.06■□□□□ 0.8
LDHB-201ENST00000350669 DNAJC5BQ9UF47 199 aa19.35■□□□□ 0.69
LDHB-201ENST00000350669 CCDC180Q9P1Z9 1646 aa19.33■□□□□ 0.68
LDHB-201ENST00000350669 FOXD1Q16676 465 aa18.8■□□□□ 0.6
LDHB-201ENST00000350669 RB1CC1Q8TDY2 1594 aa18.73■□□□□ 0.59
LDHB-201ENST00000350669 PLPPR3Q6T4P5 718 aa18.68■□□□□ 0.58
LDHB-201ENST00000350669 PABPN1Q86U42 306 aaKnown RBP eCLIP18.61■□□□□ 0.57
LDHB-201ENST00000350669 NACADO15069 1562 aa18.44■□□□□ 0.54
LDHB-201ENST00000350669 DCAF8L2P0C7V8 631 aa18.37■□□□□ 0.53
LDHB-201ENST00000350669 UNC13AQ9UPW8 1703 aa18.26■□□□□ 0.51
LDHB-201ENST00000350669 BICRAQ9NZM4 1560 aa18.24■□□□□ 0.51
LDHB-201ENST00000350669 DNAJC5Q9H3Z4 198 aa18.15■□□□□ 0.5
LDHB-201ENST00000350669 CECR2Q9BXF3 1484 aa18.11■□□□□ 0.49
LDHB-201ENST00000350669 CC2D2AQ9P2K1 1620 aa18.03■□□□□ 0.48
LDHB-201ENST00000350669 PPP6R1Q9UPN7 881 aa17.99■□□□□ 0.47
LDHB-201ENST00000350669 MYO15BQ96JP2 1530 aa17.95■□□□□ 0.46
LDHB-201ENST00000350669 ADRA2BP18089 450 aa17.94■□□□□ 0.46
LDHB-201ENST00000350669 SHROOM4Q9ULL8 1493 aa17.86■□□□□ 0.45
LDHB-201ENST00000350669 EIF4G1Q04637 1599 aaKnown RBP17.85■□□□□ 0.45
LDHB-201ENST00000350669 SCRIBQ14160 1630 aa17.7■□□□□ 0.42
LDHB-201ENST00000350669 PIAS4Q8N2W9 510 aaPredicted RBP17.65■□□□□ 0.42
LDHB-201ENST00000350669 ZCCHC6Q5VYS8 1495 aaKnown RBP17.57■□□□□ 0.4
LDHB-201ENST00000350669 DCAF1Q9Y4B6 1507 aa17.51■□□□□ 0.39
LDHB-201ENST00000350669 CUX2O14529 1486 aa17.45■□□□□ 0.38
LDHB-201ENST00000350669 ERCC6Q03468 1493 aa17.35■□□□□ 0.37
LDHB-201ENST00000350669 MSH5O43196 834 aa17.35■□□□□ 0.37
LDHB-201ENST00000350669 TRIM41Q8WV44 630 aa17.21■□□□□ 0.34
LDHB-201ENST00000350669 NESP48681 1621 aa17.06■□□□□ 0.32
LDHB-201ENST00000350669 NCAPD3P42695 1498 aa17.05■□□□□ 0.32
LDHB-201ENST00000350669 ATAD2BQ9ULI0 1458 aa16.95■□□□□ 0.3
LDHB-201ENST00000350669 THOC2Q8NI27 1593 aaKnown RBP16.95■□□□□ 0.3
LDHB-201ENST00000350669 SMARCA2P51531 1590 aa16.89■□□□□ 0.29
LDHB-201ENST00000350669 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
LDHB-201ENST00000350669 BAZ1BQ9UIG0 1483 aaKnown RBP16.77■□□□□ 0.27
LDHB-201ENST00000350669 SMARCA4P51532 1647 aa16.77■□□□□ 0.27
LDHB-201ENST00000350669 LAMC3Q9Y6N6 1575 aa16.75■□□□□ 0.27
LDHB-201ENST00000350669 KIF21AQ7Z4S6 1674 aa16.74■□□□□ 0.27
LDHB-201ENST00000350669 PDS5BQ9NTI5 1447 aa16.7■□□□□ 0.26
LDHB-201ENST00000350669 BAZ1AQ9NRL2 1556 aaPredicted RBP16.64■□□□□ 0.25
LDHB-201ENST00000350669 MRC2Q9UBG0 1479 aa16.62■□□□□ 0.25
LDHB-201ENST00000350669 WDR62O43379 1518 aa16.58■□□□□ 0.24
LDHB-201ENST00000350669 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
LDHB-201ENST00000350669 PEG3Q9GZU2 1588 aa16.56■□□□□ 0.24
LDHB-201ENST00000350669 CADPSQ9ULU8 1353 aa16.53■□□□□ 0.24
LDHB-201ENST00000350669 MROH2BQ7Z745 1585 aa16.47■□□□□ 0.23
LDHB-201ENST00000350669 PPP4R3CPQ6ZMV5 832 aa16.45■□□□□ 0.22
LDHB-201ENST00000350669 CEP164Q9UPV0 1460 aa16.44■□□□□ 0.22
LDHB-201ENST00000350669 RIMBP3CA6NJZ7 1639 aa16.43■□□□□ 0.22
LDHB-201ENST00000350669 RIMBP3BA6NNM3 1639 aa16.43■□□□□ 0.22
LDHB-201ENST00000350669 RIMBP3Q9UFD9 1639 aa16.43■□□□□ 0.22
LDHB-201ENST00000350669 FANCD2Q9BXW9 1451 aa16.37■□□□□ 0.21
LDHB-201ENST00000350669 SCAF1Q9H7N4 1312 aaKnown RBP16.36■□□□□ 0.21
LDHB-201ENST00000350669 ARHGEF11O15085 1522 aa16.34■□□□□ 0.21
LDHB-201ENST00000350669 MAPK8IP2Q13387 824 aaPredicted RBP16.33■□□□□ 0.2
LDHB-201ENST00000350669 TRHP20396 242 aaPredicted RBP16.32■□□□□ 0.2
LDHB-201ENST00000350669 URB2Q14146 1524 aaKnown RBP16.28■□□□□ 0.2
LDHB-201ENST00000350669 CYB5RLQ6IPT4 315 aa16.28■□□□□ 0.2
LDHB-201ENST00000350669 WIZO95785 1651 aa16.22■□□□□ 0.19
LDHB-201ENST00000350669 CFTRP13569 1480 aa16.21■□□□□ 0.19
LDHB-201ENST00000350669 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
LDHB-201ENST00000350669 ARAP1Q96P48 1450 aa16.15■□□□□ 0.18
LDHB-201ENST00000350669 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
LDHB-201ENST00000350669 IFT140Q96RY7 1462 aa16.11■□□□□ 0.17
LDHB-201ENST00000350669 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
LDHB-201ENST00000350669 EIF4G3O43432 1585 aaKnown RBP16.05■□□□□ 0.16
LDHB-201ENST00000350669 FBLN2P98095 1184 aa16.02■□□□□ 0.16
LDHB-201ENST00000350669 CNKSR2Q8WXI2 1034 aa16.01■□□□□ 0.15
LDHB-201ENST00000350669 CHD1O14646 1710 aa16■□□□□ 0.15
LDHB-201ENST00000350669 RSF1Q96T23 1441 aaPredicted RBP16■□□□□ 0.15
LDHB-201ENST00000350669 TOPBP1Q92547 1522 aa15.99■□□□□ 0.15
LDHB-201ENST00000350669 AQRO60306 1485 aaKnown RBP eCLIP15.98■□□□□ 0.152e-6■■■□□ 15.2
LDHB-201ENST00000350669 TOP2AP11388 1531 aaKnown RBP15.97■□□□□ 0.15
LDHB-201ENST00000350669 NCBP3Q53F19 620 aaKnown RBP15.94■□□□□ 0.14
LDHB-201ENST00000350669 KCNA4P22459 653 aa15.93■□□□□ 0.14
LDHB-201ENST00000350669 PRDM2Q13029 1718 aa15.89■□□□□ 0.13
LDHB-201ENST00000350669 TARBP1Q13395 1621 aaKnown RBP15.86■□□□□ 0.13
LDHB-201ENST00000350669 DNMBPQ6XZF7 1577 aa15.85■□□□□ 0.13
LDHB-201ENST00000350669 ABCC8Q09428 1581 aa15.83■□□□□ 0.12
LDHB-201ENST00000350669 CLASP1Q7Z460 1538 aa15.82■□□□□ 0.12
LDHB-201ENST00000350669 CCDC88BA6NC98 1476 aa15.81■□□□□ 0.12
LDHB-201ENST00000350669 POLA1P09884 1462 aaPredicted RBP15.8■□□□□ 0.12
LDHB-201ENST00000350669 SNAPC4Q5SXM2 1469 aa15.8■□□□□ 0.12
LDHB-201ENST00000350669 TDRD9Q8NDG6 1382 aaKnown RBP15.79■□□□□ 0.12
LDHB-201ENST00000350669 RAD54L2Q9Y4B4 1467 aa15.78■□□□□ 0.12
LDHB-201ENST00000350669 NPM3O75607 178 aaKnown RBP15.75■□□□□ 0.11
LDHB-201ENST00000350669 HOXD11P31277 338 aaPredicted RBP15.75■□□□□ 0.11
LDHB-201ENST00000350669 CHMP7Q8WUX9 453 aaPredicted RBP15.75■□□□□ 0.11
LDHB-201ENST00000350669 SYNJ1O43426 1573 aa15.75■□□□□ 0.11
LDHB-201ENST00000350669 RNF216Q9NWF9 866 aaPredicted RBP15.74■□□□□ 0.11
LDHB-201ENST00000350669 GAPVD1Q14C86 1478 aa15.74■□□□□ 0.11
LDHB-201ENST00000350669 SOGA1O94964 1423 aa15.7■□□□□ 0.1
LDHB-201ENST00000350669 MAGI1Q96QZ7 1491 aaPredicted RBP15.67■□□□□ 0.1
LDHB-201ENST00000350669 ILDR1Q86SU0 546 aaPredicted RBP15.66■□□□□ 0.1
LDHB-201ENST00000350669 SYNJ2O15056 1496 aa15.65■□□□□ 0.1
LDHB-201ENST00000350669 GRIN2BQ13224 1484 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms