Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 MTMR3-203ENST00000351488 4464 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 NRXN3-217ENST00000634499 6069 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SLC26A4-201ENST00000265715 4930 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SMARCAD1-204ENST00000457823 4649 ntAPPRIS ALT1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 CDH1-212ENST00000611625 4878 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ZNF701-204ENST00000540331 5538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 DHX8-201ENST00000262415 5558 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 P3H2-201ENST00000319332 3509 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 KRT78-202ENST00000359499 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 EXOC5-211ENST00000621441 10589 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 KRT18P29-201ENST00000397031 1267 ntBASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 GATS-209ENST00000454084 1030 ntTSL 3 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AC105036.2-201ENST00000569468 176 ntBASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AC111152.3-201ENST00000569699 673 ntBASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AL050303.2-201ENST00000619798 666 ntBASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AL031985.4-201ENST00000642138 673 ntBASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 CLIP1-201ENST00000302528 5833 ntAPPRIS P4 TSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 DHX58-201ENST00000251642 2617 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ZFYVE26-201ENST00000347230 9675 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 FN1-211ENST00000443816 7762 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 AC011474.4-201ENST00000623523 2076 ntBASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 TECPR2-201ENST00000359520 8686 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 FN1-207ENST00000421182 8103 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC8.53□□□□□ -1.04
CHKB-CPT1BH3BT56 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 PFKFB3-203ENST00000379775 4483 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 CCDC18-201ENST00000343253 4867 ntAPPRIS P2 TSL 5 BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC8.52□□□□□ -1.04
CHKB-CPT1BH3BT56 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 CTTNBP2-201ENST00000160373 5970 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 PC-204ENST00000524491 1714 ntTSL 2 BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 PHF21B-202ENST00000396103 3540 ntAPPRIS ALT2 TSL 2 BASIC8.52□□□□□ -1.05
CHKB-CPT1BH3BT56 AC009336.2-201ENST00000468418 3521 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms