Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 MIR3652-201ENST00000579335 131 ntBASIC11.71□□□□□ -0.53
HLA-DQA1P01909 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 AC073592.4-201ENST00000623827 446 ntBASIC11.71□□□□□ -0.53
HLA-DQA1P01909 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 FUK-202ENST00000378912 3925 ntTSL 2 BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC11.71□□□□□ -0.54
HLA-DQA1P01909 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AC015802.1-201ENST00000588104 1449 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CDV3-207ENST00000508481 661 ntTSL 3 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 MIR3180-1-201ENST00000580374 94 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CYB561-217ENST00000582997 877 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 MIR3180-3-201ENST00000584616 94 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 BNIP3P18-201ENST00000593976 575 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 WT1-AS_2.1-201ENST00000613208 137 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AC114341.1-201ENST00000618070 349 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 SLC9A7P1-202ENST00000556476 2239 ntBASIC11.7□□□□□ -0.54
HLA-DQA1P01909 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DQA1P01909 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 USP3-204ENST00000540797 5474 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms