RNA–Protein interactions for RNA: ENST00000315285.7

SPAST-201, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,117 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-201ENST00000315285 DCAF8L2P0C7V8 631 aa23.8■■□□□ 1.4
SPAST-201ENST00000315285 NISCHQ9Y2I1 1504 aa23.73■■□□□ 1.39
SPAST-201ENST00000315285 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
SPAST-201ENST00000315285 SHROOM4Q9ULL8 1493 aa22.69■■□□□ 1.22
SPAST-201ENST00000315285 EHMT2Q96KQ7 1210 aa22.01■■□□□ 1.11
SPAST-201ENST00000315285 PCGF6Q9BYE7 350 aa21.64■■□□□ 1.05
SPAST-201ENST00000315285 FAM9AQ8IZU1 332 aaPredicted RBP21.62■■□□□ 1.05
SPAST-201ENST00000315285 APLP2Q06481 763 aa21.5■■□□□ 1.03
SPAST-201ENST00000315285 PELP1Q8IZL8 1130 aaKnown RBP21.33■■□□□ 1.01
SPAST-201ENST00000315285 TRIM41Q8WV44 630 aa21.32■■□□□ 1
SPAST-201ENST00000315285 TTBK1Q5TCY1 1321 aaPredicted RBP21.31■■□□□ 1
SPAST-201ENST00000315285 ZEB1P37275 1124 aaPredicted RBP21.2■□□□□ 0.98
SPAST-201ENST00000315285 CCER1Q8TC90 406 aaPredicted RBP21.06■□□□□ 0.96
SPAST-201ENST00000315285 RANGAP1P46060 587 aaPredicted RBP21■□□□□ 0.95
SPAST-201ENST00000315285 CENPBP07199 599 aaPredicted RBP20.97■□□□□ 0.95
SPAST-201ENST00000315285 UBTFP17480 764 aaKnown RBP20.92■□□□□ 0.94
SPAST-201ENST00000315285 TRIM26Q12899 539 aaPredicted RBP20.8■□□□□ 0.92
SPAST-201ENST00000315285 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
SPAST-201ENST00000315285 HRCP23327 699 aa20.75■□□□□ 0.91
SPAST-201ENST00000315285 PPARGC1BQ86YN6 1023 aaKnown RBP20.73■□□□□ 0.91
SPAST-201ENST00000315285 ATP1B4Q9UN42 357 aaPredicted RBP20.69■□□□□ 0.9
SPAST-201ENST00000315285 LOC105371045A0A1W2PR82 267 aa20.67■□□□□ 0.9
SPAST-201ENST00000315285 YTHDC1Q96MU7 727 aaKnown RBP20.54■□□□□ 0.88
SPAST-201ENST00000315285 ERICH6Q7L0X2 663 aa20.4■□□□□ 0.86
SPAST-201ENST00000315285 NEFLP07196 543 aa20.35■□□□□ 0.85
SPAST-201ENST00000315285 HNRNPUL2Q1KMD3 747 aaKnown RBP20.24■□□□□ 0.83
SPAST-201ENST00000315285 ITGAEP38570 1179 aa20.22■□□□□ 0.83
SPAST-201ENST00000315285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.14■□□□□ 0.81
SPAST-201ENST00000315285 MYT1Q01538 1121 aa20.11■□□□□ 0.81
SPAST-201ENST00000315285 ABCC9O60706 1549 aa20.01■□□□□ 0.79
SPAST-201ENST00000315285 DIEXFQ68CQ4 756 aaKnown RBP20■□□□□ 0.79
SPAST-201ENST00000315285 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.77
SPAST-201ENST00000315285 POLR3GLQ9BT43 218 aa19.85■□□□□ 0.77
SPAST-201ENST00000315285 FAM50AQ14320 339 aaKnown RBP19.74■□□□□ 0.75
SPAST-201ENST00000315285 ZCCHC6Q5VYS8 1495 aaKnown RBP19.73■□□□□ 0.75
SPAST-201ENST00000315285 CNGB1Q14028 1251 aaPredicted RBP19.69■□□□□ 0.74
SPAST-201ENST00000315285 MYT1LQ9UL68 1186 aa19.65■□□□□ 0.74
SPAST-201ENST00000315285 CSRNP3Q8WYN3 585 aa19.61■□□□□ 0.73
SPAST-201ENST00000315285 GTF3C3Q9Y5Q9 886 aa19.61■□□□□ 0.73
SPAST-201ENST00000315285 NEUROD1Q13562 356 aa19.6■□□□□ 0.73
SPAST-201ENST00000315285 ZNF316A6NFI3 1004 aaPredicted RBP19.59■□□□□ 0.73
SPAST-201ENST00000315285 DAXXQ9UER7 740 aaPredicted RBP19.56■□□□□ 0.72
SPAST-201ENST00000315285 DCAF1Q9Y4B6 1507 aa19.55■□□□□ 0.72
SPAST-201ENST00000315285 TRIM52Q96A61 297 aa19.54■□□□□ 0.72
SPAST-201ENST00000315285 SCRIBQ14160 1630 aa19.49■□□□□ 0.71
SPAST-201ENST00000315285 ACIN1Q9UKV3 1341 aaKnown RBP19.43■□□□□ 0.7
SPAST-201ENST00000315285 ANP32CO43423 234 aa19.42■□□□□ 0.7
SPAST-201ENST00000315285 BCANQ96GW7 911 aa19.39■□□□□ 0.7
SPAST-201ENST00000315285 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
SPAST-201ENST00000315285 P3H3Q8IVL6 736 aa19.33■□□□□ 0.68
SPAST-201ENST00000315285 SLC4A1APQ9BWU0 796 aaKnown RBP19.3■□□□□ 0.68
SPAST-201ENST00000315285 ZNF326Q5BKZ1 582 aaKnown RBP19.29■□□□□ 0.68
SPAST-201ENST00000315285 RTL5Q5HYW3 569 aaPredicted RBP19.26■□□□□ 0.67
SPAST-201ENST00000315285 MYO15BQ96JP2 1530 aa19.24■□□□□ 0.67
SPAST-201ENST00000315285 CLSPNQ9HAW4 1339 aa19.22■□□□□ 0.67
SPAST-201ENST00000315285 CDK11AQ9UQ88 783 aaPredicted RBP19.18■□□□□ 0.66
SPAST-201ENST00000315285 FBLN2P98095 1184 aa19.17■□□□□ 0.66
SPAST-201ENST00000315285 ARID3CA6NKF2 412 aa19.15■□□□□ 0.66
SPAST-201ENST00000315285 RSF1Q96T23 1441 aaPredicted RBP19.09■□□□□ 0.65
SPAST-201ENST00000315285 TONSLQ96HA7 1378 aa19.04■□□□□ 0.64
SPAST-201ENST00000315285 ZNF777Q9ULD5 760 aaPredicted RBP19.01■□□□□ 0.63
SPAST-201ENST00000315285 DDX10Q13206 875 aaKnown RBP18.99■□□□□ 0.63
SPAST-201ENST00000315285 CLIP1P30622 1438 aa18.99■□□□□ 0.63
SPAST-201ENST00000315285 FKBP8Q14318 412 aa18.96■□□□□ 0.63
SPAST-201ENST00000315285 CEP162Q5TB80 1403 aa18.92■□□□□ 0.62
SPAST-201ENST00000315285 EEA1Q15075 1411 aa18.92■□□□□ 0.62
SPAST-201ENST00000315285 SCAF1Q9H7N4 1312 aaKnown RBP18.91■□□□□ 0.62
SPAST-201ENST00000315285 HNRNPUQ00839 825 aaKnown RBP eCLIP18.89■□□□□ 0.62
SPAST-201ENST00000315285 MIER1Q8N108 512 aa18.89■□□□□ 0.61
SPAST-201ENST00000315285 GOLGA3Q08378 1498 aa18.88■□□□□ 0.61
SPAST-201ENST00000315285 RB1CC1Q8TDY2 1594 aa18.85■□□□□ 0.61
SPAST-201ENST00000315285 CANXP27824 592 aaKnown RBP18.85■□□□□ 0.61
SPAST-201ENST00000315285 CHIC2Q9UKJ5 165 aa18.83■□□□□ 0.61
SPAST-201ENST00000315285 ANP32AP39687 249 aaKnown RBP18.83■□□□□ 0.6
SPAST-201ENST00000315285 FAM9BQ8IZU0 186 aa18.81■□□□□ 0.6
SPAST-201ENST00000315285 WRNQ14191 1432 aaPredicted RBP eCLIP18.79■□□□□ 0.6
SPAST-201ENST00000315285 MTUS2Q5JR59 1369 aa18.79■□□□□ 0.6
SPAST-201ENST00000315285 TNIKQ9UKE5 1360 aa18.78■□□□□ 0.6
SPAST-201ENST00000315285 NACADO15069 1562 aa18.77■□□□□ 0.6
SPAST-201ENST00000315285 ZBTB47Q9UFB7 747 aaPredicted RBP18.76■□□□□ 0.59
SPAST-201ENST00000315285 NPM2Q86SE8 214 aaKnown RBP18.72■□□□□ 0.59
SPAST-201ENST00000315285 HIRIP3Q9BW71 556 aaPredicted RBP18.71■□□□□ 0.59
SPAST-201ENST00000315285 NEFMP07197 916 aa18.7■□□□□ 0.58
SPAST-201ENST00000315285 CEP164Q9UPV0 1460 aa18.69■□□□□ 0.58
SPAST-201ENST00000315285 MRS2Q9HD23 443 aa18.67■□□□□ 0.58
SPAST-201ENST00000315285 TMC1Q8TDI8 760 aa18.66■□□□□ 0.58
SPAST-201ENST00000315285 BAZ1BQ9UIG0 1483 aaKnown RBP18.64■□□□□ 0.57
SPAST-201ENST00000315285 CECR2Q9BXF3 1484 aa18.64■□□□□ 0.57
SPAST-201ENST00000315285 BCL11AQ9H165 835 aa18.63■□□□□ 0.57
SPAST-201ENST00000315285 SALL2Q9Y467 1007 aaPredicted RBP18.63■□□□□ 0.57
SPAST-201ENST00000315285 BAZ1AQ9NRL2 1556 aaPredicted RBP18.62■□□□□ 0.57
SPAST-201ENST00000315285 TSPY4P0CV99 314 aa18.61■□□□□ 0.57
SPAST-201ENST00000315285 TSPY10P0CW01 314 aa18.61■□□□□ 0.57
SPAST-201ENST00000315285 EIF4G2P78344 907 aaKnown RBP eCLIP18.61■□□□□ 0.57
SPAST-201ENST00000315285 RRP7BPQ9NSQ0 103 aa18.61■□□□□ 0.57
SPAST-201ENST00000315285 KIF27Q86VH2 1401 aa18.6■□□□□ 0.57
SPAST-201ENST00000315285 CCDC136Q96JN2 1154 aa18.6■□□□□ 0.57
SPAST-201ENST00000315285 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.58■□□□□ 0.57
SPAST-201ENST00000315285 CHGAP10645 457 aaKnown RBP18.58■□□□□ 0.56
SPAST-201ENST00000315285 KDM2AQ9Y2K7 1162 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms