Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.71□□□□□ -0.21
SOX2P48431 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 HLA-A-201ENST00000376802 1334 ntBASIC13.71□□□□□ -0.21
SOX2P48431 AKAP8P1-201ENST00000434743 1349 ntBASIC13.71□□□□□ -0.21
SOX2P48431 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
SOX2P48431 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX2P48431 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
SOX2P48431 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
SOX2P48431 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX2P48431 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 FAM220BP-201ENST00000377689 816 ntBASIC13.71□□□□□ -0.21
SOX2P48431 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 AL355306.1-201ENST00000415580 579 ntBASIC13.71□□□□□ -0.21
SOX2P48431 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.71□□□□□ -0.21
SOX2P48431 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.71□□□□□ -0.21
SOX2P48431 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.71□□□□□ -0.21
SOX2P48431 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 AC145285.3-201ENST00000564603 959 ntBASIC13.71□□□□□ -0.21
SOX2P48431 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.71□□□□□ -0.21
SOX2P48431 AC097359.3-201ENST00000603982 1210 ntBASIC13.71□□□□□ -0.21
SOX2P48431 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.71□□□□□ -0.21
SOX2P48431 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX2P48431 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX2P48431 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX2P48431 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
SOX2P48431 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX2P48431 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.71□□□□□ -0.22
SOX2P48431 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SOX2P48431 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SOX2P48431 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.71□□□□□ -0.22
SOX2P48431 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.71□□□□□ -0.22
SOX2P48431 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX2P48431 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.71□□□□□ -0.22
SOX2P48431 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
SOX2P48431 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX2P48431 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC13.71□□□□□ -0.22
SOX2P48431 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX2P48431 AL607033.1-201ENST00000623900 1599 ntBASIC13.71□□□□□ -0.22
SOX2P48431 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX2P48431 CICP14-201ENST00000629111 2732 ntBASIC13.7□□□□□ -0.22
SOX2P48431 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.7□□□□□ -0.22
SOX2P48431 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.7□□□□□ -0.22
SOX2P48431 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.7□□□□□ -0.22
SOX2P48431 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.7□□□□□ -0.22
SOX2P48431 AC009078.2-202ENST00000463353 338 ntBASIC13.7□□□□□ -0.22
SOX2P48431 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.7□□□□□ -0.22
SOX2P48431 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.7□□□□□ -0.22
SOX2P48431 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
SOX2P48431 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.7□□□□□ -0.22
SOX2P48431 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX2P48431 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
SOX2P48431 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX2P48431 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.69□□□□□ -0.22
SOX2P48431 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
SOX2P48431 LINC01230-201ENST00000625222 3017 ntBASIC13.69□□□□□ -0.22
SOX2P48431 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.69□□□□□ -0.22
SOX2P48431 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms