Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PTPN4P29074 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.68■□□□□ 0.1
PTPN4P29074 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 MYO15B-237ENST00000642007 4893 ntBASIC15.68■□□□□ 0.1
PTPN4P29074 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN4P29074 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PTPN4P29074 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 KRT8P44-201ENST00000441609 1350 ntBASIC15.68■□□□□ 0.1
PTPN4P29074 MIR346-201ENST00000362234 95 ntBASIC15.68■□□□□ 0.1
PTPN4P29074 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.68■□□□□ 0.1
PTPN4P29074 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
PTPN4P29074 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.68■□□□□ 0.1
PTPN4P29074 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
PTPN4P29074 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.68■□□□□ 0.1
PTPN4P29074 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.68■□□□□ 0.1
PTPN4P29074 AC021097.1-201ENST00000607902 574 ntBASIC15.68■□□□□ 0.1
PTPN4P29074 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN4P29074 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN4P29074 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN4P29074 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PTPN4P29074 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.68■□□□□ 0.1
PTPN4P29074 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 AC126365.1-201ENST00000578585 1514 ntBASIC15.68■□□□□ 0.1
PTPN4P29074 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.68■□□□□ 0.1
PTPN4P29074 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PTPN4P29074 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
PTPN4P29074 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 FO538757.1-201ENST00000623083 1397 ntBASIC15.67■□□□□ 0.1
PTPN4P29074 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
PTPN4P29074 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.67■□□□□ 0.1
PTPN4P29074 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.67■□□□□ 0.1
PTPN4P29074 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 MIR6080-201ENST00000617359 66 ntBASIC15.67■□□□□ 0.1
PTPN4P29074 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 AL137784.3-201ENST00000623858 2288 ntBASIC15.67■□□□□ 0.1
PTPN4P29074 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PTPN4P29074 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PTPN4P29074 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.67■□□□□ 0.1
PTPN4P29074 OR2I1P-209ENST00000641730 5365 ntBASIC15.67■□□□□ 0.1
PTPN4P29074 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.67■□□□□ 0.1
PTPN4P29074 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PTPN4P29074 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PTPN4P29074 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms