Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC3O15379 SPCS2P4-201ENST00000436160 681 ntBASIC15.15■□□□□ 0.02
HDAC3O15379 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.15■□□□□ 0.02
HDAC3O15379 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.15■□□□□ 0.02
HDAC3O15379 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.15■□□□□ 0.02
HDAC3O15379 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.15■□□□□ 0.02
HDAC3O15379 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HDAC3O15379 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.15■□□□□ 0.02
HDAC3O15379 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HDAC3O15379 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC3O15379 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
HDAC3O15379 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
HDAC3O15379 AP3S2-216ENST00000617003 1561 ntBASIC15.15■□□□□ 0.02
HDAC3O15379 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
HDAC3O15379 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
HDAC3O15379 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HDAC3O15379 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC3O15379 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 AC117489.1-201ENST00000625169 3217 ntBASIC15.14■□□□□ 0.01
HDAC3O15379 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
HDAC3O15379 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
HDAC3O15379 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
HDAC3O15379 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC3O15379 ADH5P3-201ENST00000433842 1137 ntBASIC15.14■□□□□ 0.01
HDAC3O15379 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC3O15379 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC3O15379 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
HDAC3O15379 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC3O15379 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
HDAC3O15379 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC3O15379 MTHFR-210ENST00000641407 2387 ntBASIC15.14■□□□□ 0.01
HDAC3O15379 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HDAC3O15379 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC3O15379 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
HDAC3O15379 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.13■□□□□ 0.01
HDAC3O15379 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 IGHV3-62-201ENST00000520057 340 ntBASIC15.13■□□□□ 0.01
HDAC3O15379 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.13■□□□□ 0.01
HDAC3O15379 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
HDAC3O15379 AC092902.6-201ENST00000641783 218 ntBASIC15.13■□□□□ 0.01
HDAC3O15379 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC3O15379 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC3O15379 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
HDAC3O15379 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC3O15379 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HDAC3O15379 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC3O15379 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms