RNA–Protein interactions for RNA: ENST00000332814.6

C11orf88-201, Transcript of chromosome 11 open reading frame 88, humanhuman

APPRIS P4 TSL 5 BASIC

Gene C11orf88, Length 795 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-201ENST00000332814 NISCHQ9Y2I1 1504 aa39.5■■■■□ 3.91
C11orf88-201ENST00000332814 CCDC180Q9P1Z9 1646 aa35.13■■■■□ 3.21
C11orf88-201ENST00000332814 ABCC9O60706 1549 aa34.35■■■■□ 3.09
C11orf88-201ENST00000332814 DCAF8L2P0C7V8 631 aa33.1■■■□□ 2.89
C11orf88-201ENST00000332814 RB1CC1Q8TDY2 1594 aa33.08■■■□□ 2.89
C11orf88-201ENST00000332814 NACADO15069 1562 aa33.02■■■□□ 2.88
C11orf88-201ENST00000332814 ZCCHC6Q5VYS8 1495 aaKnown RBP32.93■■■□□ 2.86
C11orf88-201ENST00000332814 MYO15BQ96JP2 1530 aa32.81■■■□□ 2.84
C11orf88-201ENST00000332814 DCAF1Q9Y4B6 1507 aa32.68■■■□□ 2.82
C11orf88-201ENST00000332814 UNC13AQ9UPW8 1703 aa32.2■■■□□ 2.75
C11orf88-201ENST00000332814 SCRIBQ14160 1630 aa32.08■■■□□ 2.73
C11orf88-201ENST00000332814 PABPN1Q86U42 306 aaKnown RBP eCLIP32.08■■■□□ 2.73
C11orf88-201ENST00000332814 BICRAQ9NZM4 1560 aa31.96■■■□□ 2.71
C11orf88-201ENST00000332814 SHROOM4Q9ULL8 1493 aa31.73■■■□□ 2.67
C11orf88-201ENST00000332814 DNAJC5BQ9UF47 199 aa31.35■■■□□ 2.61
C11orf88-201ENST00000332814 EIF4G1Q04637 1599 aaKnown RBP31.18■■■□□ 2.58
C11orf88-201ENST00000332814 CC2D2AQ9P2K1 1620 aa31.04■■■□□ 2.56
C11orf88-201ENST00000332814 CECR2Q9BXF3 1484 aa30.86■■■□□ 2.53
C11orf88-201ENST00000332814 BAZ1AQ9NRL2 1556 aaPredicted RBP30.66■■■□□ 2.5
C11orf88-201ENST00000332814 SMARCA4P51532 1647 aa30.66■■■□□ 2.5
C11orf88-201ENST00000332814 SMARCA2P51531 1590 aa30.49■■■□□ 2.47
C11orf88-201ENST00000332814 ATAD2BQ9ULI0 1458 aa30.47■■■□□ 2.47
C11orf88-201ENST00000332814 MROH2BQ7Z745 1585 aa30.44■■■□□ 2.46
C11orf88-201ENST00000332814 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
C11orf88-201ENST00000332814 PEG3Q9GZU2 1588 aa30.32■■■□□ 2.45
C11orf88-201ENST00000332814 HMGXB3Q12766 1538 aa30.32■■■□□ 2.44
C11orf88-201ENST00000332814 BAZ1BQ9UIG0 1483 aaKnown RBP30.29■■■□□ 2.44
C11orf88-201ENST00000332814 WIZO95785 1651 aa30.11■■■□□ 2.41
C11orf88-201ENST00000332814 RSF1Q96T23 1441 aaPredicted RBP30.11■■■□□ 2.41
C11orf88-201ENST00000332814 TOP2AP11388 1531 aaKnown RBP29.85■■■□□ 2.37
C11orf88-201ENST00000332814 NESP48681 1621 aa29.69■■■□□ 2.34
C11orf88-201ENST00000332814 ERCC6Q03468 1493 aa29.68■■■□□ 2.34
C11orf88-201ENST00000332814 LAMC3Q9Y6N6 1575 aa29.67■■■□□ 2.34
C11orf88-201ENST00000332814 CADPSQ9ULU8 1353 aa29.58■■■□□ 2.33
C11orf88-201ENST00000332814 PDS5BQ9NTI5 1447 aa29.5■■■□□ 2.31
C11orf88-201ENST00000332814 SUPT5HO00267 1087 aaKnown RBP29.47■■■□□ 2.31
C11orf88-201ENST00000332814 CCDC88BA6NC98 1476 aa29.46■■■□□ 2.31
C11orf88-201ENST00000332814 CFTRP13569 1480 aa29.39■■■□□ 2.3
C11orf88-201ENST00000332814 KIF21AQ7Z4S6 1674 aa29.34■■■□□ 2.29
C11orf88-201ENST00000332814 CUX2O14529 1486 aa29.28■■■□□ 2.28
C11orf88-201ENST00000332814 FANCD2Q9BXW9 1451 aa29.26■■■□□ 2.27
C11orf88-201ENST00000332814 CEP164Q9UPV0 1460 aa29.25■■■□□ 2.27
C11orf88-201ENST00000332814 THOC2Q8NI27 1593 aaKnown RBP29.24■■■□□ 2.27
C11orf88-201ENST00000332814 MRC2Q9UBG0 1479 aa29.18■■■□□ 2.26
C11orf88-201ENST00000332814 PRDM2Q13029 1718 aa29.18■■■□□ 2.26
C11orf88-201ENST00000332814 WDR62O43379 1518 aa29.05■■■□□ 2.24
C11orf88-201ENST00000332814 URB2Q14146 1524 aaKnown RBP28.92■■■□□ 2.22
C11orf88-201ENST00000332814 ABCC8Q09428 1581 aa28.82■■■□□ 2.2
C11orf88-201ENST00000332814 TOPBP1Q92547 1522 aa28.79■■■□□ 2.2
C11orf88-201ENST00000332814 DNMBPQ6XZF7 1577 aa28.77■■■□□ 2.2
C11orf88-201ENST00000332814 IFT140Q96RY7 1462 aa28.62■■■□□ 2.17
C11orf88-201ENST00000332814 CUX1P39880 1505 aa28.56■■■□□ 2.16
C11orf88-201ENST00000332814 POLA1P09884 1462 aaPredicted RBP28.53■■■□□ 2.16
C11orf88-201ENST00000332814 FGD5Q6ZNL6 1462 aa28.5■■■□□ 2.15
C11orf88-201ENST00000332814 WRNQ14191 1432 aaPredicted RBP eCLIP28.45■■■□□ 2.15
C11orf88-201ENST00000332814 SOGA1O94964 1423 aa28.44■■■□□ 2.14
C11orf88-201ENST00000332814 TARBP1Q13395 1621 aaKnown RBP28.43■■■□□ 2.14
C11orf88-201ENST00000332814 ZNF608Q9ULD9 1512 aaPredicted RBP28.43■■■□□ 2.14
C11orf88-201ENST00000332814 RAD54L2Q9Y4B4 1467 aa28.4■■■□□ 2.14
C11orf88-201ENST00000332814 EIF4G3O43432 1585 aaKnown RBP28.37■■■□□ 2.13
C11orf88-201ENST00000332814 TOP2BQ02880 1626 aa28.35■■■□□ 2.13
C11orf88-201ENST00000332814 BIVM-ERCC5R4GMW8 1640 aa28.34■■■□□ 2.13
C11orf88-201ENST00000332814 SYNJ1O43426 1573 aa28.33■■■□□ 2.13
C11orf88-201ENST00000332814 AQRO60306 1485 aaKnown RBP eCLIP28.29■■■□□ 2.12
C11orf88-201ENST00000332814 WDR97A6NE52 1622 aa28.27■■■□□ 2.12
C11orf88-201ENST00000332814 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.12
C11orf88-201ENST00000332814 DNAJC5Q9H3Z4 198 aa28.26■■■□□ 2.11
C11orf88-201ENST00000332814 ABCA10Q8WWZ4 1543 aa28.2■■■□□ 2.1
C11orf88-201ENST00000332814 GRIN2BQ13224 1484 aa28.12■■■□□ 2.09
C11orf88-201ENST00000332814 GAPVD1Q14C86 1478 aa28.12■■■□□ 2.09
C11orf88-201ENST00000332814 ABCA5Q8WWZ7 1642 aa28.08■■■□□ 2.09
C11orf88-201ENST00000332814 OSCARQ8IYS5 282 aa28.08■■■□□ 2.09
C11orf88-201ENST00000332814 SNAPC4Q5SXM2 1469 aa28.07■■■□□ 2.08
C11orf88-201ENST00000332814 PBRM1Q86U86 1689 aa28.04■■■□□ 2.08
C11orf88-201ENST00000332814 MAGI1Q96QZ7 1491 aaPredicted RBP28.03■■■□□ 2.08
C11orf88-201ENST00000332814 FBLN2P98095 1184 aa28.03■■■□□ 2.08
C11orf88-201ENST00000332814 CHD1O14646 1710 aa27.97■■■□□ 2.07
C11orf88-201ENST00000332814 CHMP7Q8WUX9 453 aaPredicted RBP27.94■■■□□ 2.06
C11orf88-201ENST00000332814 SYNJ2O15056 1496 aa27.92■■■□□ 2.06
C11orf88-201ENST00000332814 ERICH3Q5RHP9 1530 aa27.88■■■□□ 2.05
C11orf88-201ENST00000332814 KIF27Q86VH2 1401 aa27.88■■■□□ 2.05
C11orf88-201ENST00000332814 TRIM41Q8WV44 630 aa27.85■■■□□ 2.05
C11orf88-201ENST00000332814 ADAMTS12P58397 1594 aa27.84■■■□□ 2.05
C11orf88-201ENST00000332814 FHAD1B1AJZ9 1412 aa27.8■■■□□ 2.04
C11orf88-201ENST00000332814 GRIN2AQ12879 1464 aa27.75■■■□□ 2.03
C11orf88-201ENST00000332814 CUL7Q14999 1698 aa27.66■■■□□ 2.02
C11orf88-201ENST00000332814 IGF1RP08069 1367 aa27.66■■■□□ 2.02
C11orf88-201ENST00000332814 CLASP1Q7Z460 1538 aa27.66■■■□□ 2.02
C11orf88-201ENST00000332814 ARHGEF11O15085 1522 aa27.61■■■□□ 2.01
C11orf88-201ENST00000332814 RIMBP3CA6NJZ7 1639 aa27.59■■■□□ 2.01
C11orf88-201ENST00000332814 RIMBP3BA6NNM3 1639 aa27.59■■■□□ 2.01
C11orf88-201ENST00000332814 RIMBP3Q9UFD9 1639 aa27.59■■■□□ 2.01
C11orf88-201ENST00000332814 NUP160Q12769 1436 aa27.58■■■□□ 2.01
C11orf88-201ENST00000332814 CEP170Q5SW79 1584 aa27.57■■■□□ 2
C11orf88-201ENST00000332814 CARMIL1Q5VZK9 1371 aa27.56■■■□□ 2
C11orf88-201ENST00000332814 RUSC2Q8N2Y8 1516 aa27.54■■■□□ 2
C11orf88-201ENST00000332814 AEBP2Q6ZN18 517 aaPredicted RBP27.51■■□□□ 1.99
C11orf88-201ENST00000332814 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
C11orf88-201ENST00000332814 RAPGEF2Q9Y4G8 1499 aa27.42■■□□□ 1.98
C11orf88-201ENST00000332814 EEA1Q15075 1411 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms