Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 MIR638-201ENST00000385237 100 ntBASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 MTDHP2-201ENST00000601468 714 ntBASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 AL139246.5-201ENST00000606645 996 ntBASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA3Q9Y5H0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.46■■□□□ 1.19
PCDHGA3Q9Y5H0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.46■■□□□ 1.19
PCDHGA3Q9Y5H0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA3Q9Y5H0 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.46■■□□□ 1.19
PCDHGA3Q9Y5H0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA3Q9Y5H0 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.45■■□□□ 1.18
PCDHGA3Q9Y5H0 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA3Q9Y5H0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA3Q9Y5H0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHGA3Q9Y5H0 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
PCDHGA3Q9Y5H0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHGA3Q9Y5H0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.44■■□□□ 1.18
PCDHGA3Q9Y5H0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.44■■□□□ 1.18
PCDHGA3Q9Y5H0 DUSP8P4-201ENST00000399538 1761 ntBASIC22.43■■□□□ 1.18
PCDHGA3Q9Y5H0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHGA3Q9Y5H0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHGA3Q9Y5H0 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHGA3Q9Y5H0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 AL136116.3-201ENST00000402907 1138 ntBASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 AL356740.2-201ENST00000601559 647 ntBASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHGA3Q9Y5H0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 MIR935-201ENST00000401179 91 ntBASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHGA3Q9Y5H0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA3Q9Y5H0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHGA3Q9Y5H0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.39■■□□□ 1.17
PCDHGA3Q9Y5H0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHGA3Q9Y5H0 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 AF131216.4-201ENST00000638924 1588 ntBASIC22.38■■□□□ 1.17
PCDHGA3Q9Y5H0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHGA3Q9Y5H0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHGA3Q9Y5H0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
PCDHGA3Q9Y5H0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHGA3Q9Y5H0 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA3Q9Y5H0 FOXO3B-201ENST00000395675 1928 ntBASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms