Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEC61A2Q9H9S3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 LONRF2P2-201ENST00000439212 571 ntBASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 AC103834.1-201ENST00000520383 144 ntBASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.69■□□□□ 0.9
SEC61A2Q9H9S3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 AC074183.2-201ENST00000623112 922 ntBASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SEC61A2Q9H9S3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEC61A2Q9H9S3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEC61A2Q9H9S3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 AL592295.1-201ENST00000400984 884 ntBASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.65■□□□□ 0.9
SEC61A2Q9H9S3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SEC61A2Q9H9S3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.9
SEC61A2Q9H9S3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.64■□□□□ 0.89
SEC61A2Q9H9S3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.63■□□□□ 0.89
SEC61A2Q9H9S3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 HLA-L-211ENST00000482052 1765 ntBASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEC61A2Q9H9S3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 AC019171.1-201ENST00000601251 1056 ntBASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SEC61A2Q9H9S3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms