Protein–RNA interactions for Protein: Q8NDX5

PHC3, Polyhomeotic-like protein 3, humanhuman

Predictions only

Length 983 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3Q8NDX5 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PHC3Q8NDX5 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
PHC3Q8NDX5 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PHC3Q8NDX5 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
PHC3Q8NDX5 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PHC3Q8NDX5 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PHC3Q8NDX5 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PHC3Q8NDX5 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
PHC3Q8NDX5 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PHC3Q8NDX5 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PHC3Q8NDX5 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PHC3Q8NDX5 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.06■■□□□ 1.28
PHC3Q8NDX5 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
PHC3Q8NDX5 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PHC3Q8NDX5 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PHC3Q8NDX5 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PHC3Q8NDX5 YBX1P4-201ENST00000392794 808 ntBASIC23.06■■□□□ 1.28
PHC3Q8NDX5 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PHC3Q8NDX5 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 MIR4508-201ENST00000584178 70 ntBASIC23.05■■□□□ 1.28
PHC3Q8NDX5 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 FOXO3B-201ENST00000395675 1928 ntBASIC23.05■■□□□ 1.28
PHC3Q8NDX5 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PHC3Q8NDX5 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PHC3Q8NDX5 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PHC3Q8NDX5 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PHC3Q8NDX5 SLC6A10P-202ENST00000431994 2058 ntBASIC23.02■■□□□ 1.28
PHC3Q8NDX5 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.02■■□□□ 1.28
PHC3Q8NDX5 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PHC3Q8NDX5 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PHC3Q8NDX5 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PHC3Q8NDX5 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PHC3Q8NDX5 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PHC3Q8NDX5 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PHC3Q8NDX5 AL592295.1-201ENST00000400984 884 ntBASIC23.01■■□□□ 1.27
PHC3Q8NDX5 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PHC3Q8NDX5 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.01■■□□□ 1.27
PHC3Q8NDX5 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
PHC3Q8NDX5 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
PHC3Q8NDX5 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23■■□□□ 1.27
PHC3Q8NDX5 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23■■□□□ 1.27
PHC3Q8NDX5 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23■■□□□ 1.27
PHC3Q8NDX5 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 AC103724.3-201ENST00000564481 992 ntBASIC23■■□□□ 1.27
PHC3Q8NDX5 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PHC3Q8NDX5 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
PHC3Q8NDX5 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.98■■□□□ 1.27
PHC3Q8NDX5 AL139125.2-201ENST00000623134 1869 ntBASIC22.98■■□□□ 1.27
PHC3Q8NDX5 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.98■■□□□ 1.27
PHC3Q8NDX5 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PHC3Q8NDX5 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms