RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 NISCHQ9Y2I1 1504 aa48.26■■■■■ 5.32
POLR2J3-220ENST00000613744 CCDC180Q9P1Z9 1646 aa42.41■■■■■ 4.38
POLR2J3-220ENST00000613744 ABCC9O60706 1549 aa41.07■■■■■ 4.17
POLR2J3-220ENST00000613744 DCAF8L2P0C7V8 631 aa40.37■■■■■ 4.05
POLR2J3-220ENST00000613744 ZCCHC6Q5VYS8 1495 aaKnown RBP40.35■■■■■ 4.05
POLR2J3-220ENST00000613744 DCAF1Q9Y4B6 1507 aa39.79■■■■□ 3.96
POLR2J3-220ENST00000613744 NACADO15069 1562 aa39.73■■■■□ 3.95
POLR2J3-220ENST00000613744 MYO15BQ96JP2 1530 aa39.63■■■■□ 3.93
POLR2J3-220ENST00000613744 RB1CC1Q8TDY2 1594 aa39.62■■■■□ 3.93
POLR2J3-220ENST00000613744 SCRIBQ14160 1630 aa39.03■■■■□ 3.84
POLR2J3-220ENST00000613744 SHROOM4Q9ULL8 1493 aa38.96■■■■□ 3.83
POLR2J3-220ENST00000613744 UNC13AQ9UPW8 1703 aa38.84■■■■□ 3.81
POLR2J3-220ENST00000613744 PABPN1Q86U42 306 aaKnown RBP eCLIP38.62■■■■□ 3.77
POLR2J3-220ENST00000613744 BICRAQ9NZM4 1560 aa38.47■■■■□ 3.75
POLR2J3-220ENST00000613744 CECR2Q9BXF3 1484 aa37.65■■■■□ 3.62
POLR2J3-220ENST00000613744 EIF4G1Q04637 1599 aaKnown RBP37.4■■■■□ 3.58
POLR2J3-220ENST00000613744 BAZ1AQ9NRL2 1556 aaPredicted RBP37.32■■■■□ 3.56
POLR2J3-220ENST00000613744 MROH2BQ7Z745 1585 aa37.3■■■■□ 3.56
POLR2J3-220ENST00000613744 SMARCA4P51532 1647 aa37.28■■■■□ 3.56
POLR2J3-220ENST00000613744 RSF1Q96T23 1441 aaPredicted RBP37.13■■■■□ 3.53
POLR2J3-220ENST00000613744 CC2D2AQ9P2K1 1620 aa37.08■■■■□ 3.53
POLR2J3-220ENST00000613744 DNAJC5BQ9UF47 199 aa37.06■■■■□ 3.52
POLR2J3-220ENST00000613744 SUPT5HO00267 1087 aaKnown RBP37.05■■■■□ 3.52
POLR2J3-220ENST00000613744 WIZO95785 1651 aa36.96■■■■□ 3.51
POLR2J3-220ENST00000613744 ATAD2BQ9ULI0 1458 aa36.9■■■■□ 3.5
POLR2J3-220ENST00000613744 SMARCA2P51531 1590 aa36.81■■■■□ 3.48
POLR2J3-220ENST00000613744 PEG3Q9GZU2 1588 aa36.79■■■■□ 3.48
POLR2J3-220ENST00000613744 NCAPD3P42695 1498 aa36.69■■■■□ 3.46
POLR2J3-220ENST00000613744 BAZ1BQ9UIG0 1483 aaKnown RBP36.66■■■■□ 3.46
POLR2J3-220ENST00000613744 HRCP23327 699 aa36.54■■■■□ 3.44
POLR2J3-220ENST00000613744 HMGXB3Q12766 1538 aa36.54■■■■□ 3.44
POLR2J3-220ENST00000613744 TOP2AP11388 1531 aaKnown RBP36.48■■■■□ 3.43
POLR2J3-220ENST00000613744 CCDC88BA6NC98 1476 aa36.15■■■■□ 3.38
POLR2J3-220ENST00000613744 NESP48681 1621 aa35.79■■■■□ 3.32
POLR2J3-220ENST00000613744 CADPSQ9ULU8 1353 aa35.74■■■■□ 3.31
POLR2J3-220ENST00000613744 CFTRP13569 1480 aa35.66■■■■□ 3.3
POLR2J3-220ENST00000613744 LAMC3Q9Y6N6 1575 aa35.59■■■■□ 3.29
POLR2J3-220ENST00000613744 PELP1Q8IZL8 1130 aaKnown RBP35.53■■■■□ 3.28
POLR2J3-220ENST00000613744 CHIC1Q5VXU3 224 aa35.5■■■■□ 3.27
POLR2J3-220ENST00000613744 PCGF6Q9BYE7 350 aa35.47■■■■□ 3.27
POLR2J3-220ENST00000613744 PRDM2Q13029 1718 aa35.37■■■■□ 3.25
POLR2J3-220ENST00000613744 PDS5BQ9NTI5 1447 aa35.37■■■■□ 3.25
POLR2J3-220ENST00000613744 FANCD2Q9BXW9 1451 aa35.35■■■■□ 3.25
POLR2J3-220ENST00000613744 KIF21AQ7Z4S6 1674 aa35.29■■■■□ 3.24
POLR2J3-220ENST00000613744 ERCC6Q03468 1493 aa35.28■■■■□ 3.24
POLR2J3-220ENST00000613744 PPARGC1BQ86YN6 1023 aaKnown RBP35.24■■■■□ 3.23
POLR2J3-220ENST00000613744 CEP164Q9UPV0 1460 aa35.2■■■■□ 3.23
POLR2J3-220ENST00000613744 ABCC8Q09428 1581 aa35.17■■■■□ 3.22
POLR2J3-220ENST00000613744 WRNQ14191 1432 aaPredicted RBP eCLIP34.98■■■■□ 3.191e-6■■■■■ 58.5
POLR2J3-220ENST00000613744 URB2Q14146 1524 aaKnown RBP34.97■■■■□ 3.19
POLR2J3-220ENST00000613744 MRC2Q9UBG0 1479 aa34.97■■■■□ 3.19
POLR2J3-220ENST00000613744 CUX1P39880 1505 aa34.92■■■■□ 3.18
POLR2J3-220ENST00000613744 THOC2Q8NI27 1593 aaKnown RBP34.9■■■■□ 3.18
POLR2J3-220ENST00000613744 SYNJ1O43426 1573 aa34.88■■■■□ 3.17
POLR2J3-220ENST00000613744 TOPBP1Q92547 1522 aa34.87■■■■□ 3.17
POLR2J3-220ENST00000613744 DNMBPQ6XZF7 1577 aa34.83■■■■□ 3.17
POLR2J3-220ENST00000613744 TRIM41Q8WV44 630 aa34.82■■■■□ 3.16
POLR2J3-220ENST00000613744 WDR62O43379 1518 aa34.79■■■■□ 3.16
POLR2J3-220ENST00000613744 TRIM26Q12899 539 aaPredicted RBP34.77■■■■□ 3.16
POLR2J3-220ENST00000613744 TOP2BQ02880 1626 aa34.76■■■■□ 3.15
POLR2J3-220ENST00000613744 ZEB1P37275 1124 aaPredicted RBP34.73■■■■□ 3.15
POLR2J3-220ENST00000613744 BIVM-ERCC5R4GMW8 1640 aa34.72■■■■□ 3.15
POLR2J3-220ENST00000613744 FGD5Q6ZNL6 1462 aa34.68■■■■□ 3.14
POLR2J3-220ENST00000613744 POLA1P09884 1462 aaPredicted RBP34.64■■■■□ 3.14
POLR2J3-220ENST00000613744 RAD54L2Q9Y4B4 1467 aa34.58■■■■□ 3.13
POLR2J3-220ENST00000613744 CUX2O14529 1486 aa34.55■■■■□ 3.12
POLR2J3-220ENST00000613744 SOGA1O94964 1423 aa34.53■■■■□ 3.12
POLR2J3-220ENST00000613744 TARBP1Q13395 1621 aaKnown RBP34.39■■■■□ 3.1
POLR2J3-220ENST00000613744 IFT140Q96RY7 1462 aa34.39■■■■□ 3.1
POLR2J3-220ENST00000613744 TDRD9Q8NDG6 1382 aaKnown RBP34.33■■■■□ 3.09
POLR2J3-220ENST00000613744 ZNF608Q9ULD9 1512 aaPredicted RBP34.32■■■■□ 3.08
POLR2J3-220ENST00000613744 MYT1Q01538 1121 aa34.31■■■■□ 3.08
POLR2J3-220ENST00000613744 ABCA10Q8WWZ4 1543 aa34.3■■■■□ 3.08
POLR2J3-220ENST00000613744 LOC105371045A0A1W2PR82 267 aa34.3■■■■□ 3.08
POLR2J3-220ENST00000613744 SCAF1Q9H7N4 1312 aaKnown RBP34.28■■■■□ 3.08
POLR2J3-220ENST00000613744 RUSC2Q8N2Y8 1516 aa34.27■■■■□ 3.08
POLR2J3-220ENST00000613744 FAM9AQ8IZU1 332 aaPredicted RBP34.27■■■■□ 3.08
POLR2J3-220ENST00000613744 WDR97A6NE52 1622 aa34.26■■■■□ 3.07
POLR2J3-220ENST00000613744 AQRO60306 1485 aaKnown RBP eCLIP34.25■■■■□ 3.074e-8■■■■□ 22.5
POLR2J3-220ENST00000613744 KIF27Q86VH2 1401 aa34.16■■■■□ 3.06
POLR2J3-220ENST00000613744 EIF4G3O43432 1585 aaKnown RBP34.13■■■■□ 3.05
POLR2J3-220ENST00000613744 GAPVD1Q14C86 1478 aa34.12■■■■□ 3.05
POLR2J3-220ENST00000613744 ABCA5Q8WWZ7 1642 aa34.1■■■■□ 3.05
POLR2J3-220ENST00000613744 PBRM1Q86U86 1689 aa33.97■■■■□ 3.03
POLR2J3-220ENST00000613744 IGF1RP08069 1367 aa33.97■■■■□ 3.03
POLR2J3-220ENST00000613744 GRIN2BQ13224 1484 aa33.96■■■■□ 3.03
POLR2J3-220ENST00000613744 CSRNP3Q8WYN3 585 aa33.95■■■■□ 3.03
POLR2J3-220ENST00000613744 EEA1Q15075 1411 aa33.92■■■■□ 3.02
POLR2J3-220ENST00000613744 EHMT2Q96KQ7 1210 aa33.92■■■■□ 3.02
POLR2J3-220ENST00000613744 SNAPC4Q5SXM2 1469 aa33.89■■■■□ 3.02
POLR2J3-220ENST00000613744 ERICH3Q5RHP9 1530 aa33.88■■■■□ 3.01
POLR2J3-220ENST00000613744 FBLN2P98095 1184 aa33.8■■■■□ 3
POLR2J3-220ENST00000613744 CARMIL1Q5VZK9 1371 aa33.79■■■■□ 3
POLR2J3-220ENST00000613744 MAGI1Q96QZ7 1491 aaPredicted RBP33.75■■■□□ 2.99
POLR2J3-220ENST00000613744 ADAMTS12P58397 1594 aa33.73■■■□□ 2.99
POLR2J3-220ENST00000613744 CUL7Q14999 1698 aa33.71■■■□□ 2.99
POLR2J3-220ENST00000613744 FHAD1B1AJZ9 1412 aa33.71■■■□□ 2.99
POLR2J3-220ENST00000613744 CHMP7Q8WUX9 453 aaPredicted RBP33.7■■■□□ 2.99
POLR2J3-220ENST00000613744 PRXQ9BXM0 1461 aa33.69■■■□□ 2.98
POLR2J3-220ENST00000613744 ACIN1Q9UKV3 1341 aaKnown RBP33.68■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms